NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19539.1 Public Mus musculus 5 Tfip11 23 108 98 CCDS HistoryNCBI Gene:54723Re-query CCDS DB by CCDS ID:19539.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031288.13 ENSMUSP00000031288.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031288.13Link to Ensembl Protein Viewer:ENSMUSP00000031288.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031288Re-query CCDS DB by Protein ID:ENSMUSP00000031288
Original member Current member NCBI NM_018783.4 NP_061253.2 Accepted alive Link to Nucleotide Sequence:NM_018783.4Link to Protein Sequence:NP_061253.2Re-query CCDS DB by Nucleotide ID:NM_018783Re-query CCDS DB by Protein ID:NP_061253Link to BLAST:NP_061253.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061253.2 838 Q9ERA6 838 100% 0 0

Chromosomal Locations for CCDS 19539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 112327971 112328182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112329366 112329519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112329747 112329903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112331091 112331218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112331868 112332020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112332964 112333491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112333575 112333681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112334317 112334485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112334860 112335103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112335573 112335715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112336015 112336180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112336986 112337341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2517 nt):
ATGTCTCTGTCCCACTTGTACCGGGATGGCGAAGGCCACCTTGATGATGACGATGACGATGAGAGGGAGA
ACTTTGAGATCACCGACTGGGATCTCCAGAATGAGTTCAACCCCAACCGGCAGCGCCATTGGCAGACCAA
AGAGGAGGCCACCTACGGGGTGTGGGCGGAGCGAGACTCGGACGAGGAGAGGCCCAGCTTTGGAGGCAAA
AGGGCCCGAGACTATTCTGCACCTGTCAACTTCATCAGTGCGGGGCTCAAGAAAGGGGCGGCTGAGGAAG
CGGACTCCGAGGACTCTGATGCTGAAGAGAAGCCTGTTAAGCAGGAGGACTTCCCGAAGGATTTAGGACC
AAAGAAGTTAAAGACGGGTGGCAATTTTAAGCCCAGCCAGAAAGGCTTTTCAGGAGGAACCAAGTCCTTC
ATGGACTTTGGCAGCTGGGAGAGACACACGAAAGGGATCGGGCAGAAGCTGCTGCAGAAGATGGGCTACG
TCCCTGGGCGTGGCCTGGGGAAGAACGCACAGGGGATCATCAACCCCATCGAAGCCAAACAGAGAAAAGG
CAAGGGAGCCGTGGGGGCCTATGGCTCGGAGAGGACCACTCAGTCTCTGCAGGACTTCCCCGTGGCCGAC
TCGGAAGAGGAGGCAGAAGAGGAGTTTCAGAAGGAGCTGAGCCAATGGAGGAAAGACCCCAGCGGGAGCA
AGAAGAAGCCAAAGTACTCTTACAAGACTGTGGAGGAGCTGAAGGCCAAGGGCAGGGTCAGCAAGAAGCT
CACAGCACCTCAGAAGGAACTGTCTCAGGTCAAGGTGATCGACATGACAGGCCGGGAGCAGAAGGTGTAC
TACAGCTACAGCCAAATCAGCCACAAGCACAGCGTGCCCGATGAAGGGGTGCCATTGCTGGCGCAGCTGC
CCCCCACAGCCGGCAAGGAAGCCAGGATGCCGGGCTTTGCACTGCCTGAGCTGGAGCACAACCTGCAGCT
GCTCATTGAGCGCACGGAGCAGGAGATCATCCAGAGCGACCGGCAGCTCCAGTATGAGCGGGACATGGTG
GTCAGCCTGTCACACGAGCTGGAGAAGACGGCCGAGGTTCTTGCACATGAGGAGCGTGTCATCTCTAACC
TCAGCAAGGTGCTGGCCCTGGTGGAGGAATGTGAGCGCCGCATGCAGCCCCATGGCGCCGACCCCCTCAC
TCTGGATGAGTGTGCCCGCATCTTTGAGACACTACAGGACAAGTATTATGAGGAGTACCGCCTGGCGGAC
CGCGCAGACCTCGCTGTGGCCATTGTCTACCCGCTCGTGAAGGACTACTTTAAGGATTGGCACCCCCTCG
AGGACGGCAGCTATGGCACCCAGATCATCTCCAAGTGGAAGAGCCTCCTGGAGAACGACCAGCTGCTGTC
TCACAGCAGCCAGGACCTGTCCTCCGATGCCTTCCACAGGCTCATGTGGGAGGTCTGGATGCCTTTCGTT
CGGAATGTCGTCGCCCAGTGGCAGCCACGGAACTGTGAGCCGATGGTGGATTTCCTGGACAGCTGGGCAC
ACATCATCCCCGTGTGGATCCTGGACAATATCCTGGACCAGCTCATCTTCCCTAAGCTGCAGAAGGAGGT
GGACAACTGGAACCCCCTGACAGACACCGTTCCCATCCACTCGTGGATCCACCCGTGGCTGCCGCTCATG
CAGGCCCGCCTGGAGCCACTCTACTCCCCTGTGCGCAGCAAGTTGTCCAGCGCACTGCAGAAATGGCACC
CCAGCGACGCCTCAGCCAAGCTCATCCTGCAGCCCTGGAAAGAGGTCCTCACCCCTGGGTCCTGGGAGGC
CTTCATGCTCAGGAACATCGTGCCCAAGCTGGGCATGTGCCTGGGAGAGCTTGTCATCAACCCCCACCAG
CAGCACATGGACGCCTTCTACTGGGTGATGGACTGGGAGGGGATGATCTCCGTCTCCAGCCTGGTGGGGC
TGCTGGAGAAGCATTTCTTCCCCAAGTGGCTCCAGGTGCTGTGCTCCTGGCTCAGTAACAGTCCCAATTA
CGAGGAGATCACCAAGTGGTACCTGGGCTGGAAGTCTATGTTCTCAGACCAGGTGCTGGCCCACCCTTCT
GTCAAGGACAAGTTCAACGAAGCGCTCGACATAATGAACAGGGCTGTGTCCTCCAATGTTGGTGCCTACA
TGCAGCCGGGTGCGAGAGAGAACATTGCCTACCTCACCCACACAGAGCGCAGGAAGGACTTCCAGTACGA
GGCCATGCAGGAGCGCCGGGAGGCTGAGAACATGGCACAGAGAGGCATCGGTGTGGCCGCCAGCTCCGTG
CCCATGAACTTTAAGGACCTCATCGAGACTAAGGCAGAGGAGCACAACATTGTGTTCATGCCTGTCATCG
GCAAGCGGCACGAGGGCAAGCAGCTCTACACCTTCGGCCGCATCGTCATCTACATTGACCGGGGTGTGGT
GTTTGTGCAGGGCGAGAAGACGTGGGTGCCCACCTCCCTGCAGAGCCTCATCGACATGGCCAAGTAG

Translation (838 aa):
MSLSHLYRDGEGHLDDDDDDERENFEITDWDLQNEFNPNRQRHWQTKEEATYGVWAERDSDEERPSFGGK
RARDYSAPVNFISAGLKKGAAEEADSEDSDAEEKPVKQEDFPKDLGPKKLKTGGNFKPSQKGFSGGTKSF
MDFGSWERHTKGIGQKLLQKMGYVPGRGLGKNAQGIINPIEAKQRKGKGAVGAYGSERTTQSLQDFPVAD
SEEEAEEEFQKELSQWRKDPSGSKKKPKYSYKTVEELKAKGRVSKKLTAPQKELSQVKVIDMTGREQKVY
YSYSQISHKHSVPDEGVPLLAQLPPTAGKEARMPGFALPELEHNLQLLIERTEQEIIQSDRQLQYERDMV
VSLSHELEKTAEVLAHEERVISNLSKVLALVEECERRMQPHGADPLTLDECARIFETLQDKYYEEYRLAD
RADLAVAIVYPLVKDYFKDWHPLEDGSYGTQIISKWKSLLENDQLLSHSSQDLSSDAFHRLMWEVWMPFV
RNVVAQWQPRNCEPMVDFLDSWAHIIPVWILDNILDQLIFPKLQKEVDNWNPLTDTVPIHSWIHPWLPLM
QARLEPLYSPVRSKLSSALQKWHPSDASAKLILQPWKEVLTPGSWEAFMLRNIVPKLGMCLGELVINPHQ
QHMDAFYWVMDWEGMISVSSLVGLLEKHFFPKWLQVLCSWLSNSPNYEEITKWYLGWKSMFSDQVLAHPS
VKDKFNEALDIMNRAVSSNVGAYMQPGARENIAYLTHTERRKDFQYEAMQERREAENMAQRGIGVAASSV
PMNFKDLIETKAEEHNIVFMPVIGKRHEGKQLYTFGRIVIYIDRGVVFVQGEKTWVPTSLQSLIDMAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH