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Report for CCDS6048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6048.1 Public Homo sapiens 8 KCTD9 24 110 108 CCDS HistoryNCBI Gene:54793Re-query CCDS DB by CCDS ID:6048.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221200.9 ENSP00000221200.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221200.9Link to Ensembl Protein Viewer:ENSP00000221200.4Re-query CCDS DB by Nucleotide ID:ENST00000221200Re-query CCDS DB by Protein ID:ENSP00000221200
Original member Current member NCBI NM_017634.4 NP_060104.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017634.4Link to Protein Sequence:NP_060104.2Re-query CCDS DB by Nucleotide ID:NM_017634Re-query CCDS DB by Protein ID:NP_060104Link to BLAST:NP_060104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060104.2 389 Q7L273 389 100% 0 0

Chromosomal Locations for CCDS 6048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25429857 25429973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25432504 25432637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25433330 25433435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25435363 25435512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25436235 25436330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25436418 25436485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25439279 25439407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25439606 25439664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25440577 25440673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25444292 25444335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25446129 25446250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25458199 25458246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGAGGCGGGTGACCCTGTTCCTGAACGGCAGCCCCAAGAACGGAAAGGTGGTTGCTGTATATGGAACTT
TATCTGATTTGCTTTCTGTGGCCAGCAGTAAACTCGGCATAAAAGCCACCAGTGTGTATAATGGGAAAGG
TGGACTGATTGATGATATTGCTTTGATCAGGGATGATGATGTTTTGTTTGTTTGTGAAGGAGAGCCATTT
ATTGATCCTCAGACAGATTCTAAGCCTCCTGAGGGATTGTTAGGATTCCACACAGACTGGCTGACATTAA
ATGTTGGAGGGCGGTACTTTACAACTACACGGAGCACTTTAGTGAATAAAGAACCTGACAGTATGCTGGC
CCACATGTTTAAGGACAAAGGTGTCTGGGGAAATAAGCAAGATCATAGAGGAGCTTTCTTAATTGACCGA
AGTCCTGAGTACTTCGAACCCATTTTGAACTACTTGCGTCATGGACAGCTCATTGTAAATGATGGCATTA
ATTTATTGGGTGTGTTAGAAGAAGCAAGATTTTTTGGTATTGACTCATTGATTGAACACCTAGAAGTGGC
AATAAAGAATTCTCAACCACCGGAGGATCATTCACCAATATCCCGAAAGGAATTTGTCCGATTTTTGCTA
GCAACTCCAACCAAGTCAGAACTGCGATGCCAGGGTTTGAACTTCAGTGGTGCTGATCTTTCTCGTTTGG
ACCTTCGATACATTAACTTCAAAATGGCCAATTTAAGCCGCTGTAATCTTGCACATGCAAATCTTTGCTG
TGCAAATCTTGAACGAGCTGATCTCTCTGGATCAGTGCTTGACTGTGCGAATCTCCAGGGAGTCAAGATG
CTCTGTTCTAATGCAGAAGGAGCATCCCTGAAACTGTGTAATTTTGAGGATCCTTCTGGTCTTAAAGCCA
ATTTAGAAGGTGCTAATCTGAAAGGTGTGGATATGGAAGGAAGTCAGATGACAGGAATTAACCTGAGAGT
GGCTACCTTAAAAAATGCAAAGTTGAAGAACTGTAACCTCAGAGGAGCAACTCTGGCAGGAACTGATTTA
GAGAATTGTGATCTGTCTGGGTGTGATCTTCAAGAAGCCAACCTGAGAGGGTCCAACGTGAAGGGAGCTA
TATTTGAAGAGATGCTGACACCACTACACATGTCACAAAGTGTCAGATGA

Translation (389 aa):
MRRVTLFLNGSPKNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPF
IDPQTDSKPPEGLLGFHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDR
SPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLL
ATPTKSELRCQGLNFSGADLSRLDLRYINFKMANLSRCNLAHANLCCANLERADLSGSVLDCANLQGVKM
LCSNAEGASLKLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATLKNAKLKNCNLRGATLAGTDL
ENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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