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Report for CCDS34297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34297.1 Public Homo sapiens 5 CDHR2 24 110 108 CCDS HistoryNCBI Gene:54825Re-query CCDS DB by CCDS ID:34297.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34297.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261944.10 ENSP00000261944.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261944.10Link to Ensembl Protein Viewer:ENSP00000261944.5Re-query CCDS DB by Nucleotide ID:ENST00000261944Re-query CCDS DB by Protein ID:ENSP00000261944
Original member Current member EBI ENST00000510636.5 ENSP00000424565.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510636.5Link to Ensembl Protein Viewer:ENSP00000424565.1Re-query CCDS DB by Nucleotide ID:ENST00000510636Re-query CCDS DB by Protein ID:ENSP00000424565
Original member Current member NCBI NM_001171976.2 NP_001165447.1 Accepted alive Link to Nucleotide Sequence:NM_001171976.2Link to Protein Sequence:NP_001165447.1Re-query CCDS DB by Nucleotide ID:NM_001171976Re-query CCDS DB by Protein ID:NP_001165447Link to BLAST:NP_001165447.1
Original member Current member NCBI NM_017675.6 NP_060145.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017675.6Link to Protein Sequence:NP_060145.3Re-query CCDS DB by Nucleotide ID:NM_017675Re-query CCDS DB by Protein ID:NP_060145Link to BLAST:NP_060145.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165447.1 1310 Q9BYE9 1310 100% 0 0
NP_060145.3 1310 Q9BYE9 1310 100% 0 0

Chromosomal Locations for CCDS 34297.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176565353 176565404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176565672 176565743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176568678 176568817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176568960 176569010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176571213 176571302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176574083 176574172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176575084 176575209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176575280 176575426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176575506 176575581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176575724 176575839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176575952 176576185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176577399 176577554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176577637 176577798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176578034 176578095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176578365 176578608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176581343 176581582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176584190 176584259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176584410 176585015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176585954 176586025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176586793 176586842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176589031 176589182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176589330 176589438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176589528 176589616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176590078 176590146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176590253 176590330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176590425 176590485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176590563 176590687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176591210 176591323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176591404 176591484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176592723 176592780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176595532 176595672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3933 nt):
ATGGCCCAGCTATGGCTGTCCTGCTTCCTCCTTCCTGCCCTCGTGGTGTCTGTGGCAGCCAACGTGGCCC
CGAAGTTCCTAGCCAACATGACGTCAGTGATCCTGCCTGAGGACCTGCCTGTGGGTGCCCAGGCCTTCTG
GTTGGTAGCGGAAGACCAGGACAATGACCCTCTGACCTATGGGATGAGCGGCCCCAATGCCTACTTCTTC
GCTGTCACTCCGAAAACTGGGGAAGTGAAGCTGGCCAGCGCTCTGGACTACGAGACACTCTACACATTCA
AAGTCACCATCTCCGTGAGCGACCCCTACATCCAGGTGCAGAGGGAGATGCTGGTGATTGTGGAAGATAG
AAACGACAACGCACCCGTTTTCCAGAACACCGCTTTCTCCACCAGCATCAACGAGACCCTGCCCGTGGGC
AGTGTGGTGTTCTCCGTGCTGGCCGTGGATAAAGACATGGGGTCTGCAGGCATGGTCGTGTACTCCATAG
AGAAGGTCATCCCTAGCACTGGGGACAGCGAGCATCTCTTCCGGATCCTGGCCAATGGCTCCATAGTCCT
CAATGGCAGCCTCAGCTACAACAACAAGAGCGCTTTCTACCAGCTGGAGCTGAAGGCCTGTGACTTGGGC
GGCATGTACCACAACACCTTCACCATCCAGTGCTCCCTGCCTGTCTTCCTGTCCATCTCCGTGGTGGACC
AGCCTGACCTTGACCCCCAGTTTGTCAGGGAGTTTTACTCGGCCTCTGTGGCTGAGGATGCAGCCAAGGG
AACCTCGGTGCTGACGGTGGAGGCTGTGGATGGCGACAAAGGCATCAATGACCCTGTGATCTACAGCATC
TCCTACTCCACGCGGCCCGGCTGGTTTGACATCGGGGCAGATGGGGTGATCAGGGTCAACGGCTCCCTGG
ACCGTGAGCAGCTGCTGGAGGCGGATGAGGAGGTGCAGCTGCAGGTCACGGCCACCGAGACACACCTCAA
CATCTACGGGCAGGAGGCCAAGGTGAGCATCTGGGTGACAGTGAGAGTGATGGACGTCAATGACCACAAA
CCTGAGTTTTACAACTGCAGCCTCCCAGCCTGCACCTTCACCCCCGAAGAGGCCCAAGTGAACTTCACTG
GCTACGTGGACGAGCATGCCTCCCCCCGCATCCCCATCGATGACCTCACCATGGTGGTCTACGACCCGGA
CAAGGGCAGCAATGGCACCTTCCTGTTGTCGCTGGGGGGCCCCGATGCAGAAGCCTTCAGCGTCTCCCCG
GAGCGGGCAGTGGGCTCAGCCTCCGTTCAGGTGCTGGTGAGAGTATCCGCGCTGGTGGACTACGAGAGGC
AGACGGCGATGGCGGTGCAGGTTGTGGCCACAGACTCCGTCAGCCAGAACTTCTCCGTCGCCATGGTGAC
CATCCACCTTAGAGACATTAATGACCACAGGCCCACGTTTCCCCAGAGCTTGTACGTCCTCACGGTGCCA
GAGCACAGCGCCACCGGCTCTGTGGTCACCGACAGCATCCACGCCACGGACCCAGACACGGGCGCGTGGG
GCCAAATTACCTACAGCCTGCTCCCAGGAAATGGGGCAGACCTCTTCCAAGTGGATCCCGTCTCAGGGAC
GGTGACGGTGAGGAACGGTGAGCTGCTGGACCGGGAGAGCCAGGCCGTGTACTACCTGACGCTGCAGGCC
ACAGACGGCGGGAACCTGTCCTCCTCCACCACACTGCAGATCCACCTGCTGGACATCAACGACAATGCAC
CCGTGGTTAGCGGCTCCTACAACATCTTCGTCCAGGAGGAGGAGGGCAATGTCTCCGTGACCATCCAGGC
CCACGACAATGATGAGCCGGGCACCAACAACAGCCGTCTGCTCTTCAACCTGCTGCCTGGCCCCTACAGC
CACAACTTCTCCTTGGACCCTGACACAGGGCTCCTCAGAAACCTGGGGCCCCTGGACAGAGAGGCCATCG
ACCCCGCCCTGGAGGGCCGCATTGTGCTGACAGTGCTTGTGTCTGACTGCGGCGAGCCTGTCCTCGGCAC
CAAAGTCAATGTCACCATCACTGTGGAGGACATCAATGATAACCTGCCCATCTTCAATCAGTCCAGCTAC
AACTTTACGGTGAAGGAGGAGGATCCAGGAGTGCTAGTGGGCGTGGTGAAGGCCTGGGACGCGGACCAGA
CGGAAGCCAACAACCGCATCAGCTTCAGCCTGTCGGGGAGTGGTGCCAACTACTTCATGATCCGAGGCTT
GGTGCTGGGGGCTGGGTGGGCTGAGGGCTACCTCCGGCTGCCCCCGGACGTGAGCCTGGATTACGAGACA
CAGCCCGTCTTCAACTTGACAGTGAGTGCTGAGAACCCAGACCCCCAGGGGGGTGAGACCATAGTAGACG
TCTGCGTGAATGTGAAAGACGTGAACGACAATCCCCCCACCCTGGATGTAGCCTCACTCCGGGGCATCCG
TGTGGCTGAGAATGGCTCACAGCACGGCCAGGTGGCTGTGGTGGTTGCCTCGGATGTGGACACCAGTGCC
CAGCTGGAGATACAGCTTGTGAACATTCTCTGCACCAAGGCCGGGGTCGATGTGGGCAGCCTATGCTGGG
GCTGGTTCTCAGTGGCGGCCAACGGCTCTGTGTACATCAACCAGAGCAAAGCCATCGACTACGAGGCCTG
TGACCTGGTCACGCTGGTTGTGCGGGCCTGTGACCTAGCCACGGACCCCGGCTTCCAGGCCTACAGCAAC
AATGGAAGCCTCCTCATTACCATTGAGGACGTGAATGACAATGCACCCTATTTTCTGCCTGAGAATAAGA
CTTTTGTGATCATCCCTGAACTCGTGCTGCCCAACCGGGAGGTGGCTTCTGTCCGGGCCAGAGACGATGA
TTCAGGGAACAATGGCGTCATCCTGTTCTCCATCCTCCGAGTAGACTTCATCTCTAAGGACGGGGCCACC
ATCCCTTTCCAGGGTGTCTTCTCGATCTTCACCTCCTCCGAGGCCGACGTGTTCGCTGGGAGCATTCAGC
CGGTGACCAGCCTCGACTCCACTCTCCAAGGCACCTACCAAGTGACAGTCCAGGCCAGGGACAGACCTTC
CTTGGGTCCTTTCCTGGAAGCCACCACCACCCTGAATCTCTTCACCGTGGACCAGAGTTACCGCTCGCGG
CTGCAGTTCTCCACACCGAAGGAGGAGGTGGGCGCCAACAGACAGGCGATTAATGCGGCTCTTACCCAGG
CAACCAGGACTACAGTATACATTGTGGACATTCAGGACATAGATTCTGCAGCTCGGGCCCGACCTCACTC
CTACCTCGATGCCTACTTTGTCTTCCCCAATGGGTCAGCCCTGACCCTTGATGAGCTGAGTGTGATGATC
CGGAATGATCAGGACTCGCTGACGCAGCTGCTGCAGCTGGGGCTGGTGGTGCTGGGCTCCCAGGAGAGCC
AGGAGTCAGACCTGTCGAAACAGCTCATCAGTGTCATCATAGGATTGGGAGTGGCTTTGCTGCTGGTCCT
TGTGATCATGACCATGGCCTTCGTGTGTGTGCGGAAGAGCTACAACCGGAAGCTTCAAGCTATGAAGGCT
GCCAAGGAGGCCAGGAAGACAGCAGCAGGGGTGATGCCCTCAGCCCCTGCCATCCCAGGGACTAACATGT
ACAACACTGAGCGAGCCAACCCCATGCTGAACCTCCCCAACAAAGACCTGGGCTTGGAGTACCTCTCTCC
CTCCAATGACCTGGACTCTGTCAGCGTCAACTCCCTGGACGACAACTCTGTGGATGTGGACAAGAACAGT
CAGGAAATCAAGGAGCACAGGCCACCACACACACCACCAGAGCCAGATCCAGAGCCCCTGAGCGTGGTCC
TGTTAGGACGGCAGGCAGGCGCAAGTGGACAGCTGGAGGGGCCATCCTACACCAACGCTGGCCTGGACAC
CACGGACCTGTGA

Translation (1310 aa):
MAQLWLSCFLLPALVVSVAANVAPKFLANMTSVILPEDLPVGAQAFWLVAEDQDNDPLTYGMSGPNAYFF
AVTPKTGEVKLASALDYETLYTFKVTISVSDPYIQVQREMLVIVEDRNDNAPVFQNTAFSTSINETLPVG
SVVFSVLAVDKDMGSAGMVVYSIEKVIPSTGDSEHLFRILANGSIVLNGSLSYNNKSAFYQLELKACDLG
GMYHNTFTIQCSLPVFLSISVVDQPDLDPQFVREFYSASVAEDAAKGTSVLTVEAVDGDKGINDPVIYSI
SYSTRPGWFDIGADGVIRVNGSLDREQLLEADEEVQLQVTATETHLNIYGQEAKVSIWVTVRVMDVNDHK
PEFYNCSLPACTFTPEEAQVNFTGYVDEHASPRIPIDDLTMVVYDPDKGSNGTFLLSLGGPDAEAFSVSP
ERAVGSASVQVLVRVSALVDYERQTAMAVQVVATDSVSQNFSVAMVTIHLRDINDHRPTFPQSLYVLTVP
EHSATGSVVTDSIHATDPDTGAWGQITYSLLPGNGADLFQVDPVSGTVTVRNGELLDRESQAVYYLTLQA
TDGGNLSSSTTLQIHLLDINDNAPVVSGSYNIFVQEEEGNVSVTIQAHDNDEPGTNNSRLLFNLLPGPYS
HNFSLDPDTGLLRNLGPLDREAIDPALEGRIVLTVLVSDCGEPVLGTKVNVTITVEDINDNLPIFNQSSY
NFTVKEEDPGVLVGVVKAWDADQTEANNRISFSLSGSGANYFMIRGLVLGAGWAEGYLRLPPDVSLDYET
QPVFNLTVSAENPDPQGGETIVDVCVNVKDVNDNPPTLDVASLRGIRVAENGSQHGQVAVVVASDVDTSA
QLEIQLVNILCTKAGVDVGSLCWGWFSVAANGSVYINQSKAIDYEACDLVTLVVRACDLATDPGFQAYSN
NGSLLITIEDVNDNAPYFLPENKTFVIIPELVLPNREVASVRARDDDSGNNGVILFSILRVDFISKDGAT
IPFQGVFSIFTSSEADVFAGSIQPVTSLDSTLQGTYQVTVQARDRPSLGPFLEATTTLNLFTVDQSYRSR
LQFSTPKEEVGANRQAINAALTQATRTTVYIVDIQDIDSAARARPHSYLDAYFVFPNGSALTLDELSVMI
RNDQDSLTQLLQLGLVVLGSQESQESDLSKQLISVIIGLGVALLLVLVIMTMAFVCVRKSYNRKLQAMKA
AKEARKTAAGVMPSAPAIPGTNMYNTERANPMLNLPNKDLGLEYLSPSNDLDSVSVNSLDDNSVDVDKNS
QEIKEHRPPHTPPEPDPEPLSVVLLGRQAGASGQLEGPSYTNAGLDTTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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