NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25137.1 Public Mus musculus 11 Asic2 23 108 98 CCDS HistoryNCBI Gene:11418Re-query CCDS DB by CCDS ID:25137.1Re-query CCDS DB by GeneID:11418See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021045.12 ENSMUSP00000021045.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021045.12Link to Ensembl Protein Viewer:ENSMUSP00000021045.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021045Re-query CCDS DB by Protein ID:ENSMUSP00000021045
Original member Current member NCBI NM_007384.3 NP_031410.1 Accepted alive Link to Nucleotide Sequence:NM_007384.3Link to Protein Sequence:NP_031410.1Re-query CCDS DB by Nucleotide ID:NM_007384Re-query CCDS DB by Protein ID:NP_031410Link to BLAST:NP_031410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031410.1 563 Q925H0-2 563 100% 0 0

Chromosomal Locations for CCDS 25137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 80881057 80881158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80881613 80881681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80883422 80883501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80886596 80886687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80889733 80889886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80891744 80891800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80893974 80894124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80952480 80952607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 80971464 80971614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 81151758 81152465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGAGCCGGAGCGGCGGAGCCCGGCTGCCGGCGACCGCGCTCAGCGGCCCGGGACGCTTCCGTATGGCCC
GCGAGCAGCCGGCGCCCGCGGCGGTGGCGGCAGCTAGGCAGCCCGGGGGCGACCGGAGCGGCGATCGGGA
GCTGCAGGGGCCAGGGGTCGCCCGCAGGGGGCGGCCGTCCCTGAGTCGCACTAAATTGCACGGGCTGCGG
CACATGTGCGCGGGGCGCACGGCGGCGGGAGGCTCTTTCCAGCGGCGGGCGCTGTGGGTGCTGGCCTTCT
GCACGTCCCTTGGCTTGCTGTTGTCCTGGTCCTCGAACCGCCTGCTCTACTGGCTCAGTTTCCCGTCACA
CACGCGAGTGCACCGCGAGTGGAGCCGCCAGCTGCCGTTCCCCGCTGTCACCGTGTGCAACAACAACCCC
CTGCGCTTCCCGCGCCTCTCCAAGGGGGACCTCTACTACGCGGGCCACTGGCTAGGACTGCTGCTGCCCA
ACCGCACCGCGCGCCCGCTGGTCAGCGAGCTGCTGCGGGGCGACGAGCCGCGCAGACAGTGGTTCCGCAA
GCTGGCCGACTTCCGCCTCTTCCTGCCGCCGCGCCACTTCGAGGGCATCAGCGCTGCCTTCATGGACCGT
CTGGGCCACCAGCTGGAGGACATGCTGCTCTCCTGCAAGTACCGGGGCGAGCTCTGTGGCCCGCACAACT
TCTCCTCAGTGTTTACAAAATATGGGAAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAGCCTCTGCT
CACCACGGTCAAGGGGGGGACGGGCAACGGGCTGGAGATCATGCTGGACATTCAGCAAGATGAGTACCTG
CCCATCTGGGGAGAGACAGAGGAAACAACGTTTGAAGCAGGAGTGAAGGTTCAGATCCACAGCCAGTCTG
AGCCACCTTTCATCCAAGAGCTGGGCTTTGGGGTGGCTCCGGGGTTCCAGACCTTCGTGGCCACACAAGA
GCAGAGGCTCACATATCTGCCCCCGCCGTGGGGGGAGTGCCGGTCCTCAGAGATGGGACTCGACTTCTTT
CCTGTTTACAGCATCACAGCCTGTCGGATCGACTGTGAGACCCGCTACATCGTGGAGAACTGTAACTGCC
GCATGGTCCACATGCCAGGGGATGCCCCTTTCTGCACCCCTGAGCAGCACAAGGAGTGTGCAGAGCCAGC
CCTCGGCTTACTGGCAGAAAAGGACAGCAATTACTGTCTCTGCAGGACACCCTGCAACCTGACCCGCTAC
AACAAAGAGCTCTCCATGGTAAAGATCCCCAGCAAGACGTCAGCCAAGTACCTGGAGAAGAAATTTAACA
AATCGGAAAAATATATCTCCGAGAACATTCTTGTTCTGGATATATTTTTTGAGGCGCTCAATTACGAGAC
AATTGAACAGAAGAAGGCGTATGAAGTTGCTGCCTTACTTGGTGACATTGGTGGTCAAATGGGATTGTTC
ATTGGTGCTAGTATCCTTACAATACTAGAGCTCTTTGATTACATTTACGAGCTGATCAAAGAGAAGCTAT
TAGACCTGCTTGGCAAAGAAGAAGAGGAAGGGAGCCATGATGAGAACATGAGCACCTGCGACACAATGCC
AAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCACCCTGGAGGAG
ATTGCCTGCTGA

Translation (563 aa):
MSRSGGARLPATALSGPGRFRMAREQPAPAAVAAARQPGGDRSGDRELQGPGVARRGRPSLSRTKLHGLR
HMCAGRTAAGGSFQRRALWVLAFCTSLGLLLSWSSNRLLYWLSFPSHTRVHREWSRQLPFPAVTVCNNNP
LRFPRLSKGDLYYAGHWLGLLLPNRTARPLVSELLRGDEPRRQWFRKLADFRLFLPPRHFEGISAAFMDR
LGHQLEDMLLSCKYRGELCGPHNFSSVFTKYGKCYMFNSGEDGKPLLTTVKGGTGNGLEIMLDIQQDEYL
PIWGETEETTFEAGVKVQIHSQSEPPFIQELGFGVAPGFQTFVATQEQRLTYLPPPWGECRSSEMGLDFF
PVYSITACRIDCETRYIVENCNCRMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCLCRTPCNLTRY
NKELSMVKIPSKTSAKYLEKKFNKSEKYISENILVLDIFFEALNYETIEQKKAYEVAALLGDIGGQMGLF
IGASILTILELFDYIYELIKEKLLDLLGKEEEEGSHDENMSTCDTMPNHSETISHTVNVPLQTALGTLEE
IAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH