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Report for CCDS24358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24358.1 Public Mus musculus 11 Limk2 23 108 98 CCDS HistoryNCBI Gene:16886Re-query CCDS DB by CCDS ID:24358.1Re-query CCDS DB by GeneID:16886See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24358.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101638.3 ENSMUSP00000099162.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101638.3Link to Ensembl Protein Viewer:ENSMUSP00000099162.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101638Re-query CCDS DB by Protein ID:ENSMUSP00000099162
Original member Current member NCBI NM_010718.4 NP_034848.1 Accepted alive Link to Nucleotide Sequence:NM_010718.4Link to Protein Sequence:NP_034848.1Re-query CCDS DB by Nucleotide ID:NM_010718Re-query CCDS DB by Protein ID:NP_034848Link to BLAST:NP_034848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034848.1 638 O54785-1 638 100% 0 0

Chromosomal Locations for CCDS 24358.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3345740 3345884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3346235 3346392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347052 3347107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3347574 3347748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3348594 3348659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350392 3350448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3350642 3350773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3352291 3352377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3353277 3353463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355273 3355469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3355811 3355916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3358110 3358298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3358995 3359104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3360451 3360586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3392917 3393016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3409046 3409061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGGCGGCGCTGGCGGGTGATGAAGCCTGGAGGTGTCGGGGCTGTGGCACCTATGTTCCCCTGAGCCAGA
GGCTCTATAGGACTGCCAATGAAGCCTGGCATGGCTCCTGCTTCCGGTGTTCCGAATGCCAGGAATCCCT
CACCAACTGGTACTATGAGAAGGATGGGAAGCTGTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAA
TTCTGCCATGGGTGCTCCCTGCTGATGACGGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCAG
AGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATTGAGGATGGAGATGCATATGCCCTGGTGCAGCACGC
TACACTCTACTGTGGGAAGTGCCACAACGAGGTGGTGCTGGCACCCATGTTTGAAAGACTGTCTACAGAG
TCTGTCCAGGATCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCTACCACCGAGTGTAGACGCG
GCTTCTCGGTGACTGTGGAAAGTGCCTCTTCTAACTATGCCACCACCGTTCAAGTGAAAGAGGTCAACCG
GATGCACATCAGTCCCAACAACCGAAATGCCATCCACCCTGGGGACCGCATCTTGGAGATCAATGGGACC
CCTGTCCGTACTCTGCGAGTAGAGGAGGTGGAGGATGCAATAAAGCAGACAAGCCAGACACTTCAGCTGC
TGATTGAACATGACCCTGTGCCCCAGCGCCTGGACCAGCTACGGCTAGATGCCCGACTTCCTCCCCACAT
GCAGAGCACCGGACACACGCTCATGCTCAGCACCTTGGACACCAAGGAGAATCAGGAGGGGACACTGAGG
AGACGTTCTCTGAGGCGCAGTAACAGCATCTCCAAGTCTCCGGGCCCCAGCTCCCCCAAGGAGCCCCTGC
TCCTCAGCCGGGACATAAGCCGCTCAGAATCCCTCCGCTGCTCTAGCAGCTACTCCCAGCAGATCTTCCG
GCCCTGCGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTTGGGCAGGCCATCAAGGTGACTCAC
AAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTGATCCGCTGTGATGAGGAAACCCAGAAGACTTTCC
TGACTGAGGTGAAAGTGATGCGGAGCCTGGACCACCCTAATGTGCTCAAGTTCATCGGAGTTCTGTACAA
GGACAAGAAGCTGAATCTGCTGACCGAGTACATCGAGGGAGGCACACTCAAAGACTTCCTGCGCAGTGTG
GACCCGTTCCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCTCCTCTGGAATGGCCTATTTACACT
CCATGTGCATCATCCACCGGGACCTGAACTCACACAACTGTCTCATCAAATTGGACAAGACAGTGGTAGT
AGCCGACTTTGGGCTGTCACGGCTTATAGTAGAAGAGAGGAAAAGGCCTCCAGTAGAGAAGGCCACCACC
AAGAAACGCACCTTACGCAAGAGTGACCGCAAAAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGG
CCCCCGAGATGCTGAATGGCAAGAGCTACGATGAGACGGTGGATGTCTTCTCTTTTGGGATCGTTCTCTG
TGAGATCATTGGGCAGGTATATGCGGATCCTGATTGCCTGCCCCGCACACTGGACTTTGGCCTCAATGTT
AAGCTTTTCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCT
GCAAACTAGAGCCTGAAAGCAGACCGGCATTCTCAAAGCTGGAGGACTCGTTCGAGGCGCTCTCCCTGTT
CTTGGGGGAGCTGGCCATCCCACTGCCAGCAGAGCTGGAAGACCTGGACCACACTGTGAGCATGGAGTAT
GGCCTAACCCGGGACTCGCCACCCTAG

Translation (638 aa):
MAALAGDEAWRCRGCGTYVPLSQRLYRTANEAWHGSCFRCSECQESLTNWYYEKDGKLYCHKDYWAKFGE
FCHGCSLLMTGPAMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERLSTE
SVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT
PVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQLRLDARLPPHMQSTGHTLMLSTLDTKENQEGTLR
RRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGFFGQAIKVTH
KATGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSV
DPFPWQQKVRFAKGISSGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKATT
KKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNV
KLFWEKFVPTDCPPAFFPLAAICCKLEPESRPAFSKLEDSFEALSLFLGELAIPLPAELEDLDHTVSMEY
GLTRDSPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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