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Report for CCDS6349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6349.1 Public Homo sapiens 8 TRMT12 24 110 108 CCDS HistoryNCBI Gene:55039Re-query CCDS DB by CCDS ID:6349.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6349.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328599.4 ENSP00000329858.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328599.4Link to Ensembl Protein Viewer:ENSP00000329858.3Re-query CCDS DB by Nucleotide ID:ENST00000328599Re-query CCDS DB by Protein ID:ENSP00000329858
Original member Current member NCBI NM_017956.4 NP_060426.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017956.4Link to Protein Sequence:NP_060426.2Re-query CCDS DB by Nucleotide ID:NM_017956Re-query CCDS DB by Protein ID:NP_060426Link to BLAST:NP_060426.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060426.2 448 Q53H54 448 100% 0 0

Chromosomal Locations for CCDS 6349.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 124450928 124452274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGAGAGAGAATGTGGTTGTTAGCAACATGGAGAGAGAAAGTGGGAAGCCCGTGGCTGTTGTCGCAGTTG
TGACTGAGCCTTGGTTTACCCAGCGATACAGAGAATATCTCCAGAGGCAGAAACTCTTTGATACACAGCA
CCGTGTGGAAAAGATGCCGGATGGCTCGGTGGCGCTACCGGTGCTGGGAGAGACGCTTCCAGAGCAGCAC
CTGCAGGAGCTGAGGAATCGTGTTGCCCCAGGCAGTCCCTGTATGCTCACGCAGCTCCCGGATCCTGTTC
CTTCGAAGAGGGCCCAGGGTTGTTCACCTGCCCAAAAATTGTGTCTTGAGGTGAGTCGCTGGGTGGAGGG
TCGGGGAGTCAAGTGGTCAGCCGAGTTGGAGGCTGATTTGCCCCGATCATGGCAACGGCATGGTAATCTC
TTGTTGCTGAGTGAAGACTGTTTCCAAGCCAAGCAGTGGAAAAATCTGGGACCGGAACTCTGGGAGACCG
TTGCCTTGGCACTTGGCGTCCAGCGTTTGGCAAAACGAGGGCGGGTATCACCGGATGGTACTCGAACTCC
AGCAGTGACACTGCTGCTGGGTGACCATGGCTGGGTAGAGCATGTGGATAATGGTATCCGTTATAAGTTT
GACGTGACCCAGTGTATGTTCTCCTTTGGAAACATCACTGAGAAGCTTCGAGTGGCATCGTTGTCCTGTG
CTGGAGAAGTGCTGGTGGATCTCTATGCAGGGATTGGTTATTTTACATTGCCTTTCCTAGTTCATGCTGG
TGCTGCCTTCGTCCATGCTTGTGAGTGGAATCCCCATGCTGTAGTTGCTCTGAGAAATAACCTTGAGATC
AATGGAGTAGCAGATCGGTGCCAAATACACTTTGGAGATAACAGAAAACTGAAGCTCTCAAATATTGCAG
ATAGGGTGATCCTGGGGCTGATTCCCAGCTCTGAAGAAGGCTGGCCCATTGCCTGCCAAGTGTTAAGGCA
GGATGCTGGAGGCATTTTGCATATCCACCAAAATGTGGAATCTTTCCCAGGGAAGAATCTTCAGGCTCTT
GGAGTCAGCAAAGTAGAGAAAGAGCATTGGCTGTATCCTCAGCAAATTACCACCAACCAATGGAAAAATG
GAGCTACCAGGGATTCTAGGGGAAAAATGCTGTCACCAGCCACCAAGCCAGAGTGGCAAAGGTGGGCAGA
ATCTGCAGAAACTCGAATCGCCACTCTTCTTCAGCAGGTGCATGGGAAACCATGGAAGACACAAATTCTG
CACATCCAACCAGTGAAATCCTATGCTCCCCATGTGGATCACATAGTCCTGGATCTGGAATGCTGCCCCT
GTCCTTCAGTTGGCTAG

Translation (448 aa):
MRENVVVSNMERESGKPVAVVAVVTEPWFTQRYREYLQRQKLFDTQHRVEKMPDGSVALPVLGETLPEQH
LQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEVSRWVEGRGVKWSAELEADLPRSWQRHGNL
LLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHVDNGIRYKF
DVTQCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEI
NGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQAL
GVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQIL
HIQPVKSYAPHVDHIVLDLECCPCPSVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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