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Report for CCDS39007.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39007.1 Public Mus musculus 5 Steap2 23 108 98 CCDS HistoryNCBI Gene:74051Re-query CCDS DB by CCDS ID:39007.1Re-query CCDS DB by GeneID:74051See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39007.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015797.10 ENSMUSP00000015797.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015797.10Link to Ensembl Protein Viewer:ENSMUSP00000015797.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000015797Re-query CCDS DB by Protein ID:ENSMUSP00000015797
Original member Current member EBI ENSMUST00000115424.8 ENSMUSP00000111084.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115424.8Link to Ensembl Protein Viewer:ENSMUSP00000111084.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115424Re-query CCDS DB by Protein ID:ENSMUSP00000111084
Original member Current member EBI ENSMUST00000115425.8 ENSMUSP00000111085.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115425.8Link to Ensembl Protein Viewer:ENSMUSP00000111085.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115425Re-query CCDS DB by Protein ID:ENSMUSP00000111085
Original member Current member EBI ENSMUST00000115426.8 ENSMUSP00000111086.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115426.8Link to Ensembl Protein Viewer:ENSMUSP00000111086.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115426Re-query CCDS DB by Protein ID:ENSMUSP00000111086
Original member Current member EBI ENSMUST00000164219.7 ENSMUSP00000132501.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164219.7Link to Ensembl Protein Viewer:ENSMUSP00000132501.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164219Re-query CCDS DB by Protein ID:ENSMUSP00000132501
Original member Current member NCBI NM_001103156.2 NP_001096626.1 Accepted alive Link to Nucleotide Sequence:NM_001103156.2Link to Protein Sequence:NP_001096626.1Re-query CCDS DB by Nucleotide ID:NM_001103156Re-query CCDS DB by Protein ID:NP_001096626Link to BLAST:NP_001096626.1
Original member Current member NCBI NM_001103157.2 NP_001096627.1 Accepted alive Link to Nucleotide Sequence:NM_001103157.2Link to Protein Sequence:NP_001096627.1Re-query CCDS DB by Nucleotide ID:NM_001103157Re-query CCDS DB by Protein ID:NP_001096627Link to BLAST:NP_001096627.1
Original member Current member NCBI NM_001285469.1 NP_001272398.1 Accepted alive Link to Nucleotide Sequence:NM_001285469.1Link to Protein Sequence:NP_001272398.1Re-query CCDS DB by Nucleotide ID:NM_001285469Re-query CCDS DB by Protein ID:NP_001272398Link to BLAST:NP_001272398.1
Original member Current member NCBI NM_001285470.1 NP_001272399.1 Accepted alive Link to Nucleotide Sequence:NM_001285470.1Link to Protein Sequence:NP_001272399.1Re-query CCDS DB by Nucleotide ID:NM_001285470Re-query CCDS DB by Protein ID:NP_001272399Link to BLAST:NP_001272399.1
Original member Current member NCBI NM_028734.5 NP_083010.2 Accepted alive Link to Nucleotide Sequence:NM_028734.5Link to Protein Sequence:NP_083010.2Re-query CCDS DB by Nucleotide ID:NM_028734Re-query CCDS DB by Protein ID:NP_083010Link to BLAST:NP_083010.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096626.1 489 Q8BWB6 489 100% 0 0
NP_001096627.1 489 Q8BWB6 489 100% 0 0
NP_001272398.1 489 Q8BWB6 489 100% 0 0
NP_001272399.1 489 Q8BWB6 489 100% 0 0
NP_083010.2 489 Q8BWB6 489 100% 0 0

Chromosomal Locations for CCDS 39007.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 5673409 5673696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5675841 5676005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5677317 5677844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 5682534 5683022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGGAATCCATCTCTATGATGGGAAGCCCTAAGAGCCTGGAGACGTTTTTGCCTAATGGCATAAATGGTA
TCAAAGACGCAAGGCAGGTCACCGTGGGGGTGATAGGAAGTGGGGATTTTGCCAAGTCTCTGACCATTCG
GCTTATTAGATGTGGCTACCACGTGGTCATAGGAAGCAGAAATCCCAAGTTTGCATCAGAATTTTTTCCT
CACGTGGTAGACGTCACCCACCATGAAGATGCTTTAACAAAAACAAATATAATATTCGTGGCTATCCATA
GAGAACATTACACCTCCTTGTGGGACCTGAGACATCTGCTTGTGGGCAAAATCCTCATTGATGTGAGCAA
CAACATGAGAGTAAACCAGTACCCAGAATCCAATGCAGAGTACCTGGCTTCATTATTCCCGGACTCCTTG
ATTGTCAAAGGATTTAATGTGATCTCAGCTTGGGCACTTCAGCTAGGTCCCAAGGATGCCAGCCGCCAGG
TTTATATATGCAGCAACAATATCCAAGCTCGACAGCAGGTTATCGAGCTCGCCCGCCAGCTGAATTTTAT
TCCTGTTGACTTGGGATCTTTGTCGTCAGCCAAGGAGATTGAAAACTTACCTCTGCGACTGTTTACTCTC
TGGAGGGGGCCAGTGGTAGTAGCCATAAGCTTGGCCACATTTTTCTTTCTTTATTCCTTTGTCAGAGATG
TGATACATCCATATGCCAGAAACCAGCAGAGTGACTTTTACAAGATTCCCATTGAGATTGTGAACAAAAC
CTTGCCGATCGTCGCCATCACCCTGCTGTCTCTGGTGTACCTGGCTGGCCTCCTGGCAGCTGCGTATCAG
CTTTATTATGGCACTAAGTACCGCCGATTTCCCCCGTGGCTGGATACTTGGCTGCAGTGCAGGAAACAGC
TGGGATTGCTGAGCTTCTTCTTTGCAGTTGTTCACGTAGCCTACAGCCTCTGCTTACCAATGAGGAGGTC
GGAAAGATACCTGTTCCTCAACATGGCTTATCAGCAGGTTCATGCCAATATTGAGAACGCGTGGAACGAG
GAGGAGGTCTGGAGGATTGAGATGTACATTTCCTTTGGCATCATGAGCCTGGGCTTGTTGTCCCTGCTGG
CGGTCACTTCCATCCCATCAGTGAGCAACGCTTTGAACTGGAGAGAGTTCAGTTTCATCCAGTCTACGCT
TGGCTACGTCGCCCTGCTCATCACGACCTTCCACGTGTTAATTTACGGATGGAAGCGTGCGTTTGCAGAA
GAGTACTACCGCTTTTACACACCACCAAACTTCGTTCTTGCCCTCGTTTTGCCCTCCATTGTAATTCTGG
GTAAGATGATATTACTCCTCCCATGCATAAGCCGAAAGCTAAAACGAATTAAAAAGGGCTGGGAAAAGAG
CCAGTTTCTAGACGAAGGCATGGGAGGAGCGGTTCCTCATCTGTCCCCAGAGAGGGTCACAGTGATGTGA

Translation (489 aa):
MESISMMGSPKSLETFLPNGINGIKDARQVTVGVIGSGDFAKSLTIRLIRCGYHVVIGSRNPKFASEFFP
HVVDVTHHEDALTKTNIIFVAIHREHYTSLWDLRHLLVGKILIDVSNNMRVNQYPESNAEYLASLFPDSL
IVKGFNVISAWALQLGPKDASRQVYICSNNIQARQQVIELARQLNFIPVDLGSLSSAKEIENLPLRLFTL
WRGPVVVAISLATFFFLYSFVRDVIHPYARNQQSDFYKIPIEIVNKTLPIVAITLLSLVYLAGLLAAAYQ
LYYGTKYRRFPPWLDTWLQCRKQLGLLSFFFAVVHVAYSLCLPMRRSERYLFLNMAYQQVHANIENAWNE
EEVWRIEMYISFGIMSLGLLSLLAVTSIPSVSNALNWREFSFIQSTLGYVALLITTFHVLIYGWKRAFAE
EYYRFYTPPNFVLALVLPSIVILGKMILLLPCISRKLKRIKKGWEKSQFLDEGMGGAVPHLSPERVTVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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