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Report for CCDS88601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88601.1 Public Mus musculus 14 Dennd6a 23 108 98 CCDS HistoryNCBI Gene:211922Re-query CCDS DB by CCDS ID:88601.1Re-query CCDS DB by GeneID:211922See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88601.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000224248.1 ENSMUSP00000152966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224248.1Link to Ensembl Protein Viewer:ENSMUSP00000152966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224248Re-query CCDS DB by Protein ID:ENSMUSP00000152966
Original member Current member EBI ENSMUST00000224111.1 ENSMUSP00000153187.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224111.1Link to Ensembl Protein Viewer:ENSMUSP00000153187.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224111Re-query CCDS DB by Protein ID:ENSMUSP00000153187
Original member Current member NCBI NM_001285466.1 NP_001272395.1 Accepted alive Link to Nucleotide Sequence:NM_001285466.1Link to Protein Sequence:NP_001272395.1Re-query CCDS DB by Nucleotide ID:NM_001285466Re-query CCDS DB by Protein ID:NP_001272395Link to BLAST:NP_001272395.1
Original member Current member NCBI NM_001285467.1 NP_001272396.1 Accepted alive Link to Nucleotide Sequence:NM_001285467.1Link to Protein Sequence:NP_001272396.1Re-query CCDS DB by Nucleotide ID:NM_001285467Re-query CCDS DB by Protein ID:NP_001272396Link to BLAST:NP_001272396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272395.1 381 Q8BH65-3 381 100% 0 0
NP_001272396.1 381 Q8BH65-3 381 100% 0 0

Chromosomal Locations for CCDS 88601.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 26604736 26604753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26605876 26605938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26606905 26606960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26608090 26608212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26608536 26608631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26611967 26612061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26616591 26616656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26616894 26616958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26619315 26619404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26626706 26626759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26626865 26626974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26627319 26627421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26628672 26628746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 26629428 26629559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGGACTAGTAATGAAGGTTCGGATTCCCACGTGTCATGACAAGCCTGGGACCACGCAGATGGTGCAGT
TAACTCAGCAGGCAGATACACACACATCTATTATTTTGCCTACTGTTCACGAGGTGGATCTTTTCAGGTG
TTTCTGCCCAGTTTTTCTTCACAGTCAGATGCTCTGGGAGTTGGTGCTCTTGGGAGAGCCCCTGGTGGTC
ATGGCGCCATCGCCGTCAGAATCTTCAGAAACTGTACTGGCTCTTGTTAACTGTATCTCTCCATTAAAGT
ACTTTAGTGATTTTCGGCCTTACTTCACGATTCATGATAGTGAATTCAAAGAATATACTACCCGTACTCA
AGCTCCGCCCTCAGTCATCTTAGGAGTAACCAACCCCTTTTTTGCTAAAACACTACAGCACTGGCCACAC
ATTATTCGAATAGGAGATCTTAAACCTGCAGGTGAAATTCCTAAGCAAGTTAAAGTGAAAAAGCTGAAGA
ACCTAAAAACTCTGGATTCTAAACCTGGAGTTTATACTTCTTACAAGCCATATCTAAACAGAGATGAGGA
GATCATAAAACAACTTCAGAAGGGTATACAGCAGAAGCGTCCTTCTGAGGCCCAAAGTGTTATTCTCCGG
CGCTATTTTTTGGAACTAACACAAAGTTTCATCATTCCATTAGAAAGATATGTGGCAAGCTTGATGCCTT
TGCAGAAAAGTATTTCTCCTTGGAAGAGTCCACCCCAGTTACGGCAGTTCCTTCCAGAAGAATTTATGAA
AACACTTGAAAAAACAGGGCCTCAGCTCACCTCTGGAATAAAGGGCGACTGGATTGGACTTTACCGGCAG
TTTCTAAAGTCTCCAAATTTTGATGGCTGGTTCAAGACCCGGCGGAAAGAAATGACTCAAAAATTGGAGG
CACTTCATCTAGAAGCTCTTTGTGAAGAGGACCTCCTTCTCTGGATCCAGAAACACACAGAAGTAGAAAC
AGTGGACCTTGTGTTGAAGCTGAAAAATAAGTTGTTGCAGGCTGGCCGAGAGAGCTTACCTGTGAAGCCT
GACACTGTGGAGAAGTTACGGACACATATAGATGCAATTATCCTGGCCTTACCAGACGACCTGCAAGGCA
TACTGCTCAAGACCGGCATGACATAA

Translation (381 aa):
MGLVMKVRIPTCHDKPGTTQMVQLTQQADTHTSIILPTVHEVDLFRCFCPVFLHSQMLWELVLLGEPLVV
MAPSPSESSETVLALVNCISPLKYFSDFRPYFTIHDSEFKEYTTRTQAPPSVILGVTNPFFAKTLQHWPH
IIRIGDLKPAGEIPKQVKVKKLKNLKTLDSKPGVYTSYKPYLNRDEEIIKQLQKGIQQKRPSEAQSVILR
RYFLELTQSFIIPLERYVASLMPLQKSISPWKSPPQLRQFLPEEFMKTLEKTGPQLTSGIKGDWIGLYRQ
FLKSPNFDGWFKTRRKEMTQKLEALHLEALCEEDLLLWIQKHTEVETVDLVLKLKNKLLQAGRESLPVKP
DTVEKLRTHIDAIILALPDDLQGILLKTGMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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