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Report for CCDS38209.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38209.2 Public Mus musculus 2 Pla2g4b 23 108 98 CCDS HistoryNCBI Gene:211429Re-query CCDS DB by CCDS ID:38209.2Re-query CCDS DB by GeneID:211429See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 38209.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation and transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38209.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126150.1 ENSMUSP00000118458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126150.1Link to Ensembl Protein Viewer:ENSMUSP00000118458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126150Re-query CCDS DB by Protein ID:ENSMUSP00000118458
Original member Current member NCBI NM_145378.4 NP_663353.3 Accepted alive Link to Nucleotide Sequence:NM_145378.4Link to Protein Sequence:NP_663353.3Re-query CCDS DB by Nucleotide ID:NM_145378Re-query CCDS DB by Protein ID:NP_663353Link to BLAST:NP_663353.3

Chromosomal Locations for CCDS 38209.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120033498 120033506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120034574 120034670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120034920 120035056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120035196 120035324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120035585 120035625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120035805 120035847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120036096 120036150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120036389 120036519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120036747 120036830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120037058 120037095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120037738 120037873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120038496 120038632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120038863 120039085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120039217 120039334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120039629 120039766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120039858 120039962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120040143 120040322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120040478 120040644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120041121 120041307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120041395 120041615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGGCTCTGCAAACCTGCCCAGTCTACATGCAGGCAAAGGTGCCAGAGACATGCCTGCTCACTGTACGCG
TCCTCCGGGCCAGTGGCTTGCCTTCCAAGGACCTAGTAACCTCCTCTGACTGCTATGTGACTCTGAACCT
GCCCACGGCTTCCAGCCACACGCTCCAGACACGCACAGTCAAGAACAGCCGAAACCCTGTCTGGAATCAG
AACTTCCACTTCCGGATCCATAGGCAGCTCAAGAATGTTATGGAACTGAAAGTCTTTGACCATGACCTGG
TGACCAGAGATGACCCAGTATTGTCAGTGCTGTTTGACGTGGGGACCCTGCAAATTGGGACTCAGCGCCA
GAGCTTCTCCTTGGGTACTCAGGAGAAAGGGTGCTTAGAAGTTGAGTTTCGGCTACAGACTCTGACAGAC
TGTGAGGAACAGCTCATCAGCAATGGCATCGTGGTGGCCCGGGAACTCTCCTGCTTGCACGTTGAACTGA
AGAGGACAGGAGATCCAAAGAGGTCAGAGCGCAAAGTTCAACTTGTGGTTGCTGGGGCCTGTGAGGGCCC
ACAGGATGCCTCTGCGGGCACTGGATCTTTCCACTTCCATTATCCAGCCTGCTGGGAGCAAGAGCTGAAT
GTTCATCTGCAGGATGACCCCCATGAGCAGCTGAAGGTGCCACTACGAACTCTACCCTCCTCGCAGCTGG
TGAGACTTGTCTTCCCCACGTCCCAGGAGCCACTGATGAGGCTGGAACTCAAGAAGGAAGAAGGACCAAA
GGAGCTGGCTGTGCGGCTGGGCTGTGGGCCCTGCCCTGAGGAACAGGCCTTCCTAAGCAAGAGGAAGCAG
GTGGTGGCTGCCGCGCTGAAAAAGGCCTTACAGCTGGACCAAGACCTGCACGAGGATGAGATCCCCGTGA
TTGCCGTGATGGCCACTGGTGGTGGGATCCGGGCCATGACGTCTTTGTATGGGCAGCTGGCCGGCCTGCA
GGAGCTCGGCCTTCTCGACTGCATCTCCTATATCACGGGGGCTTCAGGATCCACCTGGGCACTGGCCAAC
CTCTATGAGGACCCAGAGTGGTCGCAGAAGGACCTGGCAGGGCCCACTGAGGTGCTGAAGACACAGGTGA
CAAAGAGCAAGCTGGGTGCGTTGGCCCCTAGCCAACTTTGGCGGTACCGGCAAGAGCTGGCTGAGCGTGC
TCGCCTGGGCCACCCAACCTGCTTCACCAACTTGTGGGCCCTCATTAATGAGGCCTTGCTGCACGACAAG
CCCCATGAACACAAACTCTCAGATCAACGAGAGGCCCTGAGTCGAGGCCAGAACCCTCTGCCTATCTATT
GTGCCCTCAACAGCAAGGAGCAGGGCCTGAGTACCTTTGACTTTGGGGAGTGGTGTGAGTTCTCTCCATA
TGAAGTCGGCTTCCCCAAGTATGGAGCCTTCATCTCCTCCGAGCTCTTTGGCTCGGAGTTCTTTATGGGG
CGGCTGGTGAAGCAGCTTCCCGAGTCCCGCATCTGCTTCCTGGAAGGCATCTGGAGCAATCTGTTTGCGG
CCAGCCTCCAAGACAGCTTGTACTGGTCCTCAGAACCCAGCCAGTTCTGGGACCGCTGGGCGCAGGATCA
GGCCAACCTGGACAAAGAGCAGGTCCCCCATCTGAAGATAGCAGAGCCACCGACAATGGCTGGCAGGATC
GCCGAGCTCTTCACTGACCTCCTGACAAAGCGTCCCCTCGCCCACGCCACCCACAACTTCACGCGAGGCC
TCCATTTCCACAAGGACTATTTCCAGAACTCTCACTTCTCTGCCTGGAAAGCTTCCAAACTGGACAGGCT
CCCCAACCAGCTGACACCCACTGAGCCCCACCTCTGCCTCCTGGATGTTGGCTATCTCATCAATACTAGC
TGCCCACCCCTCCTGCAGCCAACACGGGATGTGGACCTCATCTTGTCACTGGACTACAACCTCTACGGAG
CCTTTCAGCAGCTGCAGCTTCTGAGCCGGTTCTGCCAGGAGCAGGGCATCCCTTTCCCATCCATCTCACC
CAGCCCCGAGGAGCAGCGGCAGCCTCAGGAGTGCCATCTGTTCTGTGACCCAGCCCAGCCCGAAGCCCCG
GCTGTGCTGCACTTCCCTTTGGTCAATGACTCCTTCCAAGACTACTCTGCCCCTGGGGTGCCACGGACAT
CGGAGGAGAAGGCAGCTGGGGAGGTGAATCTGTCTTCTTCTGACTCCCCATACCACTACACAAAAGTGAC
CTACAGCCAGGAAGATGTGGACAAGCTGTTACGGCTGACGCATTACAACATCTGCAACAACCAGGATCGG
CTGCGGGAGGCCATGCACCAGGCCGTGCAGCGGCGGAGAAAGCGCAAACAGTTTAGGCCGGAGTGA

Translation (791 aa):
MALQTCPVYMQAKVPETCLLTVRVLRASGLPSKDLVTSSDCYVTLNLPTASSHTLQTRTVKNSRNPVWNQ
NFHFRIHRQLKNVMELKVFDHDLVTRDDPVLSVLFDVGTLQIGTQRQSFSLGTQEKGCLEVEFRLQTLTD
CEEQLISNGIVVARELSCLHVELKRTGDPKRSERKVQLVVAGACEGPQDASAGTGSFHFHYPACWEQELN
VHLQDDPHEQLKVPLRTLPSSQLVRLVFPTSQEPLMRLELKKEEGPKELAVRLGCGPCPEEQAFLSKRKQ
VVAAALKKALQLDQDLHEDEIPVIAVMATGGGIRAMTSLYGQLAGLQELGLLDCISYITGASGSTWALAN
LYEDPEWSQKDLAGPTEVLKTQVTKSKLGALAPSQLWRYRQELAERARLGHPTCFTNLWALINEALLHDK
PHEHKLSDQREALSRGQNPLPIYCALNSKEQGLSTFDFGEWCEFSPYEVGFPKYGAFISSELFGSEFFMG
RLVKQLPESRICFLEGIWSNLFAASLQDSLYWSSEPSQFWDRWAQDQANLDKEQVPHLKIAEPPTMAGRI
AELFTDLLTKRPLAHATHNFTRGLHFHKDYFQNSHFSAWKASKLDRLPNQLTPTEPHLCLLDVGYLINTS
CPPLLQPTRDVDLILSLDYNLYGAFQQLQLLSRFCQEQGIPFPSISPSPEEQRQPQECHLFCDPAQPEAP
AVLHFPLVNDSFQDYSAPGVPRTSEEKAAGEVNLSSSDSPYHYTKVTYSQEDVDKLLRLTHYNICNNQDR
LREAMHQAVQRRRKRKQFRPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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