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Report for CCDS11184.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11184.1 Public Homo sapiens 17 MED9 24 110 108 CCDS HistoryNCBI Gene:55090Re-query CCDS DB by CCDS ID:11184.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11184.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268711.4 ENSP00000268711.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268711.4Link to Ensembl Protein Viewer:ENSP00000268711.3Re-query CCDS DB by Nucleotide ID:ENST00000268711Re-query CCDS DB by Protein ID:ENSP00000268711
Original member Current member NCBI NM_018019.3 NP_060489.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018019.3Link to Protein Sequence:NP_060489.1Re-query CCDS DB by Nucleotide ID:NM_018019Re-query CCDS DB by Protein ID:NP_060489Link to BLAST:NP_060489.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060489.1 146 Q9NWA0 146 100% 0 0

Chromosomal Locations for CCDS 11184.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 17477042 17477265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 17491279 17491495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCCTCTGCTGGGGTGGCAGCCGGGCGACAGGCGGAGGATGTATTGCCGCCAACGTCCGACCAGCCGC
TGCCTGACACCAAGCCGCTGCCGCCTCCTCAGCCGCCGCCGGTCCCTGCGCCTCAACCGCAGCAGTCGCC
GGCGCCACGGCCTCAGTCACCTGCCCGCGCGAGGGAGGAAGAGAACTACTCCTTTTTACCTTTGGTTCAC
AACATCATCAAATGCATGGACAAGGACAGCCCGGAGGTCCACCAGGACCTGAACGCCCTCAAAAGCAAGT
TCCAGGAGATGCGCAAGCTCATCAGCACCATGCCCGGCATCCACCTGAGCCCCGAACAGCAGCAGCAGCA
GCTGCAGAGCCTCCGGGAGCAAGTCAGGACCAAGAATGAGCTTCTGCAAAAGTACAAGAGCCTCTGCATG
TTCGAAATCCCCAAGGAGTAG

Translation (146 aa):
MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREEENYSFLPLVH
NIIKCMDKDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKSLCM
FEIPKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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