NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6011.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6011.2 Public Homo sapiens 8 INTS10 24 110 108 CCDS HistoryNCBI Gene:55174Re-query CCDS DB by CCDS ID:6011.2See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6011.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397977.8 ENSP00000381064.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397977.8Link to Ensembl Protein Viewer:ENSP00000381064.3Re-query CCDS DB by Nucleotide ID:ENST00000397977Re-query CCDS DB by Protein ID:ENSP00000381064
Original member Current member NCBI NM_018142.4 NP_060612.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018142.4Link to Protein Sequence:NP_060612.2Re-query CCDS DB by Nucleotide ID:NM_018142Re-query CCDS DB by Protein ID:NP_060612Link to BLAST:NP_060612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060612.2 710 Q9NVR2 710 100% 0 0

Chromosomal Locations for CCDS 6011.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 19817538 19817666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19818275 19818342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19819573 19819676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19820379 19820518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19822439 19822520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19823301 19823441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19823873 19824044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19824803 19824972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19826426 19826559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19830406 19830559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19832028 19832110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19833169 19833321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19837052 19837160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19842848 19842927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19844076 19844238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19845704 19845797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 19851649 19851805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGTCTGCCCAGGGGGACTGCGAGTTCCTGGTGCAGCGAGCCCGGGAGTTGGTGCCGCAAGACCTGTGGG
CAGCCAAGGCGTGGCTGATCACGGCCCGCAGCCTCTACCCGGCAGACTTTAACATCCAGTATGAGATGTA
CACCATCGAGCGGAATGCAGAGCGGACCGCCACCGCCGGGAGGCTGCTGTACGACATGTTTGTGAATTTC
CCAGACCAGCCGGTGGTGTGGAGAGAAATCAGCATTATTACATCAGCATTAAGGAACGATTCACAGGACA
AACAAACCCAATTTTTAAGAAGTTTATTTGAAACTCTTCCTGGTCGGGTCCAGTGTGAAATGTTACTAAA
GGTCACGGAACAATGCTTCAACACGTTAGAACGATCAGAAATGTTGCTTCTACTTTTGAGGCGCTTCCCT
GAAACGGTGGTGCAGCATGGGGTTGGCCTTGGGGAGGCACTATTAGAGGCTGAAACTATTGAAGAACAAG
AATCTCCAGTGAACTGCTTTAGAAAATTATTTGTTTGTGATGTCCTTCCTCTAATAATTAACAACCATGA
TGTTCGATTACCTGCCAATTTATTGTATAAGTACTTGAACAAAGCAGCTGAATTTTATATCAATTATGTC
ACTAGGTCTACTCAAATAGAAAATCAGCATCAAGGCGCCCAGGATACATCTGATTTAATGTCACCTAGCA
AACGTAGCTCTCAGAAGTACATAATAGAAGGGCTGACGGAAAAATCATCCCAGATCGTGGACCCTTGGGA
GAGGTTGTTTAAGATTTTGAATGTTGTTGGAATGAGATGTGAATGGCAGATGGATAAAGGAAGACGAAGC
TATGGAGATATTTTGCATAGAATGAAGGATCTCTGCAGATACATGAACAACTTTGATAGTGAAGCACATG
CAAAATATAAAAACCAAGTGGTGTATTCCACCATGCTGGTCTTCTTTAAGAATGCATTCCAGTATGTCAA
CAGCATACAGCCATCTCTCTTCCAAGGTCCTAATGCCCCGAGCCAAGTTCCACTGGTTCTTCTTGAAGAT
GTATCGAATGTGTATGGTGATGTAGAAATTGATCGTAATAAACACATCCATAAAAAGAGGAAACTAGCTG
AAGGAAGAGAAAAAACCATGAGTTCAGACGATGAAGACTGTTCGGCGAAAGGAAGAAATCGTCACATTGT
AGTCAATAAAGCCGAACTTGCTAACTCCACTGAAGTGTTAGAAAGCTTTAAATTGGCCAGGGAGAGCTGG
GAGTTGCTCTATTCCCTAGAATTCCTTGACAAAGAATTTACAAGGATTTGCTTGGCCTGGAAGACGGATA
CTTGGCTTTGGTTAAGAATCTTCCTCACTGATATGATCATCTATCAGGGTCAATATAAAAAGGCGATAGC
CAGCCTGCATCACTTAGCAGCTCTCCAGGGATCCATTTCTCAGCCACAGATCACAGGGCAGGGGACCCTG
GAGCATCAGAGGGCGCTCATCCAGCTGGCGACGTGCCACTTTGCGCTAGGGGAGTACAGAATGACATGTG
AAAAAGTCCTTGATTTGATGTGCTACATGGTACTCCCCATTCAAGATGGAGGCAAATCCCAGGAGGAACC
CTCGAAAGTAAAGCCCAAATTTAGAAAAGGTTCGGATCTGAAGCTCCTGCCTTGTACCAGCAAGGCTATC
ATGCCATACTGCCTCCATTTAATGTTAGCCTGTTTTAAGCTTAGAGCTTTCACAGACAACAGAGACGACA
TGGCATTGGGGCATGTGATTGTGTTGCTTCAGCAAGAGTGGCCACGGGGCGAGAATCTTTTCCTGAAAGC
TGTCAATAAAATTTGCCAACAAGGAAATTTCCAATATGAGAATTTTTTCAATTACGTTACAAATATTGAT
ATGCTGGAGGAATTTGCCTACTTGAGAACTCAGGAAGGTGGGAAAATTCATCTGGAATTACTACCCAATC
AAGGAATGCTGATCAAGCACCACACTGTAACTCGAGGCATCACCAAAGGCGTGAAGGAGGACTTTCGCCT
GGCCATGGAGCGCCAGGTCTCCCGCTGTGGAGAGAATCTGATGGTGGTTCTGCACAGGTTCTGCATTAAT
GAGAAGATCTTGCTCCTTCAGACTCTGACCTGA

Translation (710 aa):
MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAGRLLYDMFVNF
PDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFP
ETVVQHGVGLGEALLEAETIEEQESPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYV
TRSTQIENQHQGAQDTSDLMSPSKRSSQKYIIEGLTEKSSQIVDPWERLFKILNVVGMRCEWQMDKGRRS
YGDILHRMKDLCRYMNNFDSEAHAKYKNQVVYSTMLVFFKNAFQYVNSIQPSLFQGPNAPSQVPLVLLED
VSNVYGDVEIDRNKHIHKKRKLAEGREKTMSSDDEDCSAKGRNRHIVVNKAELANSTEVLESFKLARESW
ELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSISQPQITGQGTL
EHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKSQEEPSKVKPKFRKGSDLKLLPCTSKAI
MPYCLHLMLACFKLRAFTDNRDDMALGHVIVLLQQEWPRGENLFLKAVNKICQQGNFQYENFFNYVTNID
MLEEFAYLRTQEGGKIHLELLPNQGMLIKHHTVTRGITKGVKEDFRLAMERQVSRCGENLMVVLHRFCIN
EKILLLQTLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH