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Report for CCDS3895.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3895.1 Public Homo sapiens 5 C5orf22 24 110 108 CCDS HistoryNCBI Gene:55322Re-query CCDS DB by CCDS ID:3895.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3895.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325366.14 ENSP00000326879.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325366.14Link to Ensembl Protein Viewer:ENSP00000326879.9Re-query CCDS DB by Nucleotide ID:ENST00000325366Re-query CCDS DB by Protein ID:ENSP00000326879
Original member Current member NCBI NM_018356.3 NP_060826.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018356.3Link to Protein Sequence:NP_060826.2Re-query CCDS DB by Nucleotide ID:NM_018356Re-query CCDS DB by Protein ID:NP_060826Link to BLAST:NP_060826.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060826.2 442 Q49AR2-1 442 100% 0 0

Chromosomal Locations for CCDS 3895.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31532393 31532473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31534272 31534417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31535744 31535893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31538260 31538689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31540949 31541011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31541281 31541402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31545646 31545712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31551293 31551432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31552773 31552902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGAGTGACTCCGCGGGAGGGCGCGCTGGTCTCCGGCGTTACCCCAAGCTCCCAGTGTGGGTGGTGGAGG
ATCATCAGGAGGTTCTACCCTTTATATACCGGGCCATAGGCTCAAAGCATCTTCCTGCCAGTAATGTAAG
TTTTTTACATTTCGACTCACATCCAGACCTCCTTATTCCTGTGAATATGCCAGCAGACACCGTGTTTGAT
AAGGAAACACTCTTTGGAGAATTAAGTATTGAAAATTGGATTATGCCTGCAGTTTATGCTGGCCATTTTT
CACATGTAATATGGTTTCATCCCACATGGGCTCAGCAGATCAGAGAGGGCAGACACCACTTTTTAGTAGG
CAAAGACACTTCTACCACAACAATCAGGGTTACAAGTACAGATCATTATTTCCTAAGTGATGGTCTGTAT
GTACCTGAAGACCAGCTAGAGAACCAAAAACCTTTACAATTGGATGTAATTATGGTAAAACCTTATAAAC
TCTGTAACAATCAAGAAGAAAACGATGCAGTGTCTTCTGCTAAGAAACCAAAGCTAGCCCTGGAAGATTC
GGAAAACACTGCCTCTACTAACTGTGACTCTTCTTCAGAAGGACTGGAAAAGGACACAGCAACACAGAGA
AGTGACCAGACTTGCCTAGAACCATCATGTTCATGTTCTTCTGAAAATCAGGAATGCCAGACTGCTGCCA
GCACTGGGGAAATTCTGGAAATTTTGAAGAAAGGGAAGGCATTTGTTTTAGATATTGACTTGGATTTTTT
TTCAGTCAAGAATCCCTTCAAAGAAATGTTCACTCAGGAAGAGTACAAAATCTTACAAGAGCTGTACCAA
TTTAAGAAACCTGGCACCAACCTAACAGAGGAAGATTTGGTAGATATTGTTGATACTCGAATTCATCAAT
TAGAGGATTTAGAAGCCACTTTCGCTGATTTGTGTGATGGTGATGATGAAGAAACGGTACAGAGATGGGC
TTCAAACCCTGGAATGGAATCACTAGTTCCCCTTGTACAGAGTTTGAAAAAACGGATGGAAGTACCAGAC
TATGAAATGGTTCACCAGGCTGGTTTAACCTGCGATTATTCAGAACTTCCTCACCATATCAGCACAGAAC
AAGAAATAGAGTGTCTTATTCAATCTGTGCATTATTTGCTGAAAAATTTACCAAATCCTACTCTTGTGAC
AATTGCAAGGTCAAGTCTGGATGATTACTGTCCTTCTGACCAAGTTGACACTATTCAAGAAAAGGTCCTC
AATATGCTACGTGCCCTCTATGGAAATCTAGACCTCCAAGTGTATGCAGCAGAGTCTCCTCCATCTTGA

Translation (442 aa):
MSDSAGGRAGLRRYPKLPVWVVEDHQEVLPFIYRAIGSKHLPASNVSFLHFDSHPDLLIPVNMPADTVFD
KETLFGELSIENWIMPAVYAGHFSHVIWFHPTWAQQIREGRHHFLVGKDTSTTTIRVTSTDHYFLSDGLY
VPEDQLENQKPLQLDVIMVKPYKLCNNQEENDAVSSAKKPKLALEDSENTASTNCDSSSEGLEKDTATQR
SDQTCLEPSCSCSSENQECQTAASTGEILEILKKGKAFVLDIDLDFFSVKNPFKEMFTQEEYKILQELYQ
FKKPGTNLTEEDLVDIVDTRIHQLEDLEATFADLCDGDDEETVQRWASNPGMESLVPLVQSLKKRMEVPD
YEMVHQAGLTCDYSELPHHISTEQEIECLIQSVHYLLKNLPNPTLVTIARSSLDDYCPSDQVDTIQEKVL
NMLRALYGNLDLQVYAAESPPS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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