NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS72176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72176.1 Public Mus musculus 8 Banp 23 108 98 CCDS HistoryNCBI Gene:53325Re-query CCDS DB by CCDS ID:72176.1Re-query CCDS DB by GeneID:53325See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026354.14 ENSMUSP00000026354.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026354.14Link to Ensembl Protein Viewer:ENSMUSP00000026354.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026354Re-query CCDS DB by Protein ID:ENSMUSP00000026354
Original member Current member NCBI NM_001285981.1 NP_001272910.1 Accepted alive Link to Nucleotide Sequence:NM_001285981.1Link to Protein Sequence:NP_001272910.1Re-query CCDS DB by Nucleotide ID:NM_001285981Re-query CCDS DB by Protein ID:NP_001272910Link to BLAST:NP_001272910.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272910.1 509 Q8VBU8-2 509 100% 0 0

Chromosomal Locations for CCDS 72176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121974496 121974565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121975900 121975991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121978555 121978754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121991528 121991703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 121997040 121997279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122000964 122001131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122005552 122005682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122007091 122007162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122007753 122007791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122020519 122020644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122024003 122024146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 122025564 122025635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGATGTCAGAGCAGGACCTGGCGGATGTGGTTCAGATTGCAGTGGAAGACCTGAGCCCTGATCACCCAG
TTGTTTTGGAGAATCATGTCGTGACAGATGATGATGAACCTGCCTTGAAGCGCCAGCGACTAGAGATCAA
TTGCCAGGACCCCTCTATAAAGTCTTTCCTGTACTCTATTAACCAGACGATATGTTTGCGGTTGGATAGC
ATTGAGGCCAAGCTGCAAGCTCTCGAGGCCACTTGCAAATCTCTGGAAGAGAAGCTAGACCTGGTCACCA
ATAAACAGCACAGTCCCATCCAGGTCCCCATGGTGGCAGGTTCCCCACTTGGCGCCACCCAGACCTGCAA
CAAAGTGCGATGCGCTGTTCCTGGGCGTCGGCAGAACACCATCGTGGTGAAAGTGCCTGGTCAGGACGAC
AGCCACAACGAAGATGGGGAGAGCGGGTCAGAGGCCAGTGACTCCGTGTCTAACTGTGGCCAGCCAGGAA
GCCAGAACATTGGAAGCAACGTCACACTCATCACCCTGAACTCCGAAGAGGACTATCCCAATGGCACCTG
GCTGGGCGATGAGAATAACCCTGAGATGCGGGTACGCTGTGCCATCATCCCTTCCGACATGTTGCACATC
AGCACCAACTGTCGCACGGCCGAGAAGATGGCGCTGACACTGCTGGACTACCTGTTCCACCGTGAGGTGC
AGGCTGTGTCCAACTTGTCCGGCCAGGGCAAGCACGGGAAGAAGCAGCTGGACCCCCTCACCATCTACGG
CATCCGGTGTCACCTCTTCTATAAATTTGGAATCACGGAATCTGACTGGTATCGGATCAAGCAGAGCATT
GACTCCAAGTGCCGGACAGCCTGGCGGCGGAAGCAGCGAGGCCAGAGCCTGGCGGTCAAGAGCTTCTCTC
GGAGGACGCCATCCTCATCCTCTTACAGTGCCTCAGAGACCATGATGGGAACCCCTCCTCCCACCAGTGA
GCTACAGCAGTCACAGCCACAGGCCCTACACTACGCCCTGGCCAACGCCCAGCAGGTCCAGATCCACCAG
ATTGGGGAGGATGGACAGGTGCAAGTAATCCCACAGGGCCACCTCCACATTGCCCAGGTGCCTCAAGGGG
AGCAGGTGCAGATCACACAGGACAGCGAGGGCAATCTGCAGATCCATCATGTGGGTCAGGATGGCCAGTC
GTGGGGCCTGTGCCAGAATCCCATTCCTGTCAGCGGTGACTCAGTGGCCCAGGCTAATCCCTCCCAGCTT
TGGCCTCTGGGAGGAGACACACTTGATCTGCCTGCTGGAAATGAAATGATCCAGGTACTGCAGGGTGCTC
AGCTCATAGCCGTGGCCTCTTCAGACCCTGCTGCTACAGGAGTAGATGGGTCGCCTCTCCAGGGCAGTGA
CATTCAGGTTCAGTATGTCCAGCTGGCGCCTGTGAGTGACCACACAGCCGCAGCGCAGACCGCAGAGGCC
CTGCAGCCCACTCTGCAGCCCGACATGCAGCTTGAACATGGGGCCATCCAGATCCAGTGA

Translation (509 aa):
MMSEQDLADVVQIAVEDLSPDHPVVLENHVVTDDDEPALKRQRLEINCQDPSIKSFLYSINQTICLRLDS
IEAKLQALEATCKSLEEKLDLVTNKQHSPIQVPMVAGSPLGATQTCNKVRCAVPGRRQNTIVVKVPGQDD
SHNEDGESGSEASDSVSNCGQPGSQNIGSNVTLITLNSEEDYPNGTWLGDENNPEMRVRCAIIPSDMLHI
STNCRTAEKMALTLLDYLFHREVQAVSNLSGQGKHGKKQLDPLTIYGIRCHLFYKFGITESDWYRIKQSI
DSKCRTAWRRKQRGQSLAVKSFSRRTPSSSSYSASETMMGTPPPTSELQQSQPQALHYALANAQQVQIHQ
IGEDGQVQVIPQGHLHIAQVPQGEQVQITQDSEGNLQIHHVGQDGQSWGLCQNPIPVSGDSVAQANPSQL
WPLGGDTLDLPAGNEMIQVLQGAQLIAVASSDPAATGVDGSPLQGSDIQVQYVQLAPVSDHTAAAQTAEA
LQPTLQPDMQLEHGAIQIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH