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Report for CCDS21960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21960.1 Public Mus musculus 7 Tubgcp2 23 108 98 CCDS HistoryNCBI Gene:74237Re-query CCDS DB by CCDS ID:21960.1Re-query CCDS DB by GeneID:74237See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21960.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026547.8 ENSMUSP00000026547.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026547.8Link to Ensembl Protein Viewer:ENSMUSP00000026547.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026547Re-query CCDS DB by Protein ID:ENSMUSP00000026547
Original member Current member NCBI NM_001286007.1 NP_001272936.1 Accepted alive Link to Nucleotide Sequence:NM_001286007.1Link to Protein Sequence:NP_001272936.1Re-query CCDS DB by Nucleotide ID:NM_001286007Re-query CCDS DB by Protein ID:NP_001272936Link to BLAST:NP_001272936.1
Original member Current member NCBI NM_133755.2 NP_598516.2 Accepted alive Link to Nucleotide Sequence:NM_133755.2Link to Protein Sequence:NP_598516.2Re-query CCDS DB by Nucleotide ID:NM_133755Re-query CCDS DB by Protein ID:NP_598516Link to BLAST:NP_598516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272936.1 905 Q921G8 905 100% 0 0
NP_598516.2 905 Q921G8 905 100% 0 0

Chromosomal Locations for CCDS 21960.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139996031 139996166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139996782 139996945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139997972 139998100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139998769 139998912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139999227 139999347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140001015 140001143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140001426 140001598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140004799 140004979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140005270 140005450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140006015 140006160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140006852 140007041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140007427 140007626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140007887 140008094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140029827 140029986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140031011 140031187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140032119 140032247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140033613 140033762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2718 nt):
ATGAGCGAATTTCGGATTCACCATGATGTCAATGAGCTGCTCAGCCTGCTCCGCATCCATGGCGGGGATG
GGGCTGAGGTCTACATTGACCTGCTGCAGAAGAACCGGACGCCGTATGTCACAACCACAGTCTCTGCCCA
CAGTGCCAAGGTCAAAATTGCAGAATTTTCTCGAACTCCTGAGGACTTTTTAAAGAAATATGATGAACTG
AAATCTAAAAATACAAGGAACCTTGACCCACTGGTGTACCTGTTATCAAAACTCACAGAAGACAAAGAGA
CACTTCAGTTTTTGCAACAGAATGCAAAGGAAAGAGCTGAGCTTGCAGCTAGTGCTGCAACTAGCAACAC
CACCAGCTTCAGCATCCCTGTTGCAGCCTCTAAGATGTCCACACAAGAGCTAGAGGAACTGAGGAAGCAG
CTTGGCAGTGTATCCACAGGCTCCACACTGCAGCAGTCTCTGGAACTTACAAGAAAGATGCTTCGAGACA
AACAGAACAAAAAAAATTCAGGCCAGCCCCTCCCTGTCTTCCCAGCATGGGTGTATGAGAGACCAACATT
GGCTGGAGATTTCCTGATTGGCTCGGGCTTGAGCTCAGACACAGTTTTGCCTATAGGTACATTGCCCTTG
GCCTCCCAGGAGTCAGCTGTGGTGGAAGATCTGCTCTATGTGCTTGTGGGTGTGGATGGCAGGTATATCA
CTGCTCAGCCTTTGGCTGGGAGGCAGAACCGTACCTTCCTTGTCGACCCCAACCTGGACCTGTCCATCCG
GGAGCTAGTAAACAGAATCCTCCCTGTGGCCGCCAGCTACTCTACTGTGACCAGGTTCATTGAGGAGAAG
TCTTCATTTGAATATGGGCAGGTGAACCATGCCCTGGCTGCTGCCATGAGAACCCTAGTAAAGGAATACC
TGATTCTGGTCACACAGCTGGAACAGCTGCACAGGCAGGGCCTCCTCTCACTGCAGAAGCTCTGGTTCTA
CATCCAGCCAGCCATGCGCACCATCGACATCCTTGCCTCCCTTGCCACCTCAGTGGATAAAGGCGAGTGT
GTGGGCGGGTCGACACTGAGCCTTCTTCATGATAGGAGCTTCAACTACACCGGGGACAGCCAGGCGCAGG
AGCTGTGCCTCTATCTGACCAAGGCAGCCAGTGCACCTTACTTCGAGATCCTGGAGAAGTGGATCTATAG
GGGCATCATTCATGACCCATACAGTGAGTTCATGGTGGAGGAACACGAGCTGCGGAAGGAGAAGATCCAG
GAGGACTACAACGACAAGTACTGGGACCAGCGCTACACTGTGCTGCCGCAGCAGATCCCATCCTTCCTGC
AGAAGGTAGCAGGCAAGATCCTCAGCACAGGAAAATACCTAAATGTGGTCAGAGAGTGTGGTCATGATGT
CACCTGTCCCGTAGCCAAAGAAATCATCTATACCCTTAAAGAGCGGGCATATGTGGAGCAGATAGAGAAA
GCGTTCAATTATGCCAGCAAAGTGCTGCTGGACTTCCTCATGGAGGAGAAGGAGCTGGTGGCCCACCTGA
GGTCCATCAAGCGCTACTTCCTGATGGACCAGGGGGACTTCTTCGTGCATTTCATGGACCTGACTGAGGA
GGAGCTCAGGAAGCCAGTGGAGGACATCATACTCACACGCCTGGAGGCCCTGTTGGAGCTGGCCCTGCGA
ATGAGCACTGCCAACACTGACCCCTTCAAAGACGACCTCAAGATTGAACTGATGCCTCACGACCTAATCA
CTCAGCTTTTGCGGGTTCTGGCCATCGAGACCAAGCAGGAAAAGGCAATGACCCATGCTGACCCCACGGA
GCTCACACTGAGTGGTCTGGAGGCCTTCTCCTTTGACTACATGGTCAAATGGCCCCTGTCACTGATTATT
AACAGGAAGGCACTCACCCGCTACCAGATGCTCTTCCGACACATGTTCTACTGCAAGCACGTGGAGCGGC
AGCTCTGCAGTGTCTGGATCAGCAACAAGACGGCCAAGCAGCATGCACTGCACTCCGCCAAGTGGTTTGC
TGGTGCTTTCACTCTGCGGCAGCGAATGCTCAACTTTGTCCAGAATATTCAGTACTACATGATGTTTGAA
GTGATGGAACCGACCTGGCACATCCTTGAGAAAAACCTGAAATCTGCCTCCAACATTGACGATGTCCTTG
GCCACCACACAAGCTTCCTTGACAACTGCCTGAAGGACTGCATGCTGACCAACCCTGAGCTGCTGAAGGT
TTTCTCCAAGCTCATGTCCGTATGCGTCATGTTTACCAACTGTATGCAGAAATTTACACAGAGTATGAAA
CTGGACAGTGAGCTAGGCCGTCTGACACTGGATCAGGGTAGTGTGCAGGGGCCACCCACAGAGACTGAAC
GGATTGAGGATCGCCCCCGGAAGGAGCTTACCAGGAAGCATCTGTCTGAGCATGTGGATGCTCCTCAGCT
GGCCTCTGGTTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTG
GCCCGACTAAGTGTCTACAGCACCAGTGACTGCGAACATGGCATGGCCAGTGTCATCTCCAGACTAGATT
TCAATGGTTTCTATGCTGAACGCCTGGAACGTCTGTCTGCAGAAAGGAGTCAGAAGGCTGCCCCCCAAGT
GCCTGTCCCACGGGGACCCTCAGCACCAGCACCCAGGGTGGCCATTCCTGCGCAATGA

Translation (905 aa):
MSEFRIHHDVNELLSLLRIHGGDGAEVYIDLLQKNRTPYVTTTVSAHSAKVKIAEFSRTPEDFLKKYDEL
KSKNTRNLDPLVYLLSKLTEDKETLQFLQQNAKERAELAASAATSNTTSFSIPVAASKMSTQELEELRKQ
LGSVSTGSTLQQSLELTRKMLRDKQNKKNSGQPLPVFPAWVYERPTLAGDFLIGSGLSSDTVLPIGTLPL
ASQESAVVEDLLYVLVGVDGRYITAQPLAGRQNRTFLVDPNLDLSIRELVNRILPVAASYSTVTRFIEEK
SSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLHRQGLLSLQKLWFYIQPAMRTIDILASLATSVDKGEC
VGGSTLSLLHDRSFNYTGDSQAQELCLYLTKAASAPYFEILEKWIYRGIIHDPYSEFMVEEHELRKEKIQ
EDYNDKYWDQRYTVLPQQIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYVEQIEK
AFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALR
MSTANTDPFKDDLKIELMPHDLITQLLRVLAIETKQEKAMTHADPTELTLSGLEAFSFDYMVKWPLSLII
NRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMMFE
VMEPTWHILEKNLKSASNIDDVLGHHTSFLDNCLKDCMLTNPELLKVFSKLMSVCVMFTNCMQKFTQSMK
LDSELGRLTLDQGSVQGPPTETERIEDRPRKELTRKHLSEHVDAPQLASGFEATINNFDKNFSAHLLDLL
ARLSVYSTSDCEHGMASVISRLDFNGFYAERLERLSAERSQKAAPQVPVPRGPSAPAPRVAIPAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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