NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39131.1 Public Mus musculus 5 Csn2 23 108 98 CCDS HistoryNCBI Gene:12991Re-query CCDS DB by CCDS ID:39131.1Re-query CCDS DB by GeneID:12991See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197422.4 ENSMUSP00000143341.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197422.4Link to Ensembl Protein Viewer:ENSMUSP00000143341.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197422Re-query CCDS DB by Protein ID:ENSMUSP00000143341
Original member Current member EBI ENSMUST00000199624.4 ENSMUSP00000143409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199624.4Link to Ensembl Protein Viewer:ENSMUSP00000143409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199624Re-query CCDS DB by Protein ID:ENSMUSP00000143409
Original member Current member NCBI NM_009972.2 NP_034102.1 Accepted alive Link to Nucleotide Sequence:NM_009972.2Link to Protein Sequence:NP_034102.1Re-query CCDS DB by Nucleotide ID:NM_009972Re-query CCDS DB by Protein ID:NP_034102Link to BLAST:NP_034102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034102.1 231 P10598 231 100% 0 0

Chromosomal Locations for CCDS 39131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87693872 87693877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87694477 87695001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87696028 87696072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87696154 87696177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87697120 87697140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87697257 87697280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87698028 87698078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (696 nt):
ATGAAGGTCTTCATCCTCGCCTGCCTTGTGGCCCTTGCTCTTGCAAGAGAGACTACATTTACTGTATCCT
CTGAGACTGATAGTATTTCCAGTGAGGAATCTGTTGAACATATCAATGAGCAGAAACTTCAGAAGGTGAA
TCTCATGGGACAGCTGCAGGCAGAGGATGTGCTCCAGGCTAAAGTTCACTCCAGCATCCAGTCACAGCCC
CAGGCCTTTCCATATGCTCAGGCTCAAACCATCTCTTGCAATCCCGTCCCACAAAACATCCAGCCTATTG
CTCAACCCCCTGTGGTGCCATCTCTTGGGCCTGTCATTTCTCCTGAACTGGAATCCTTCCTTAAAGCTAA
AGCCACCATCCTTCCCAAGCACAAACAGATGCCCCTCCTTAACTCTGAAACTGTGCTCCGCCTCATAAAC
TCTCAAATCCCCAGCCTTGCCAGTCTTGCTAATCTGCACCTTCCTCAGTCTCTGGTCCAGCTCCTGGCAC
AGGTTGTTCAGGCTTTTCCTCAGACTCACCTGGTTTCTTCTCAGACCCAGCTGTCTCTTCCTCAGTCCAA
AGTTCTGTACTTTCTGCAGCAAGTAGCACCCTTCCTTCCACAAGATATGTCTGTCCAAGACCTTCTGCAG
TACCTAGAACTTCTTAACCCCACCGTCCAATTCCCTGCCACTCCACAACATTCCGTTTCTGTCTAA

Translation (231 aa):
MKVFILACLVALALARETTFTVSSETDSISSEESVEHINEQKLQKVNLMGQLQAEDVLQAKVHSSIQSQP
QAFPYAQAQTISCNPVPQNIQPIAQPPVVPSLGPVISPELESFLKAKATILPKHKQMPLLNSETVLRLIN
SQIPSLASLANLHLPQSLVQLLAQVVQAFPQTHLVSSQTQLSLPQSKVLYFLQQVAPFLPQDMSVQDLLQ
YLELLNPTVQFPATPQHSVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH