NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS71430.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71430.1 Public Mus musculus 4 Sgip1 23 108 98 CCDS HistoryNCBI Gene:73094Re-query CCDS DB by CCDS ID:71430.1Re-query CCDS DB by GeneID:73094See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71430.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072481.11 ENSMUSP00000072301.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072481.11Link to Ensembl Protein Viewer:ENSMUSP00000072301.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072481Re-query CCDS DB by Protein ID:ENSMUSP00000072301
Original member Current member NCBI NM_001285860.1 NP_001272789.1 Accepted alive Link to Nucleotide Sequence:NM_001285860.1Link to Protein Sequence:NP_001272789.1Re-query CCDS DB by Nucleotide ID:NM_001285860Re-query CCDS DB by Protein ID:NP_001272789Link to BLAST:NP_001272789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272789.1 639 Q8VD37-4 639 100% 0 0

Chromosomal Locations for CCDS 71430.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102760556 102760565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102852883 102852946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102860770 102860794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102863665 102863733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102867640 102867696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102869754 102869808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102870549 102870724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102900526 102900537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102905565 102905576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102908808 102908832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102909738 102909789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102911459 102911544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102915059 102915151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102918781 102918855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102927461 102927585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102928786 102928912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102956099 102956210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102962375 102962530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102964541 102964673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102966149 102966351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102967611 102967675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102968171 102968335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102970057 102970079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGATGGAAGGACTGAAAAAACGTACAAGGAAGGCCTTTGGAATACGGAAGAAAGAAAAAGACACTGACT
CTACAGGCTCGCCAGACCGAGATGGAATGCCCAGCCCACACGAGCCACCCTACCATAGCAAAGCAGAGTG
TGCGCGGGAAGGAGGGAAGAAAGCTTCGAAGAAAAGCAATGGGGCACCAAATGGATTTTATGCAGAAATC
GATTGGGAAAGATATAACTCACCTGAGCTAGATGAAGAAGGTTACAGCATCAGACCTGAGGAACCAGGCT
CTACCAAAGGAAAGCACTTTTATTCCTCAAGTGAATCTGAAGAGGAAGAAGAGTCGCACAAGAAATTCAA
CATCAAGATTAAACCCTTGCAATCTAAGGACGTCCTGAAGAATGCAGCGACGGTAGATGAGCTGAAGGCT
TCAATAGGCAACATCGCACTTTCCCCTTCGCCTGTGAGGAAAAGTCCGAGGCGCAGCCCGGGTGCAATTA
AAAGGAACTTATCCAGTGAAGAAGTTGCAAGACCCAGGCGTTCCACCCCAACTCCAGAACTTACAAGCAA
GAAGCCTCTGGATGACACTCTGGCCCTTGCTCCCCTCTTTGGTCCACCATTAGAGTCAGCTTTTGATGAG
CAGAAGACGGAAGTTCTTTTAGATCAGCCTGAGATATGGGGTTCAGGCCAACCGATGAACCCAAGTACGG
AGTCGCCAGAGCTAGCAAGACCTTTCCCCACTGGAACACCTCCACCTCTGCCTCCAAAAACTGTACCAGC
CACTCCGCCTCGAACAGGCTCCCCCTTAACAGTTGCAACAGGTGCGTCTTCTCCTGCTCGACCAGCCACC
CCCTTAGTTCCTTGCAGCACCACTCCGCCTCCACCTCCTCCCCGGCCTCCATCCCGGCCAAAGCTACCTC
CAGGAAAGCCTGGAGTTGGAGATGTGTCCAGACCTTTTAGCCCACCCATACACTCCTCCAGCCCTCCTCC
GATAGCACCCTTAGCCCGGGCTGAAAGCACTTCTTCAATATCGTCAACTAACTCACTGAGCGCAGCCACC
ACTCCCACAGTTGGTTCCTCCCGGGGGCCCAGTCCCCTAACTATGGGGGCCCAGGACACCCTCCCGGTCG
CAGCAGCTTTCACAGAAACTGTCAACGCCTACTTCAAAGGAGCAGATCCAAGCAAGTGCATTGTTAAGAT
CACGGGAGAAATGGTGTTGTCCTTCCCTGCTGGTATCACCAGACACTTTGCCAACAACCCATCCCCAGCA
GCTCTGACTTTCCGGGTGGTAAATTCCAGCAGGTTAGAGCACGTCCTGCCGAACCCCCAACTTCTCTGCT
GTGATAATACACAAAATGATGCCAATACCAAGGAATTCTGGGTAAACATGCCAAATTTGATGACTCACCT
AAAGAAAGTCTCTGAACAAAAACCCCAGGCTACATACTATAATGTGGACATGCTCAAATATCAGGTGTCT
GCCCAGGGCATTCAGTCCACACCTCTGAACTTGGCGGTGAACTGGCGCTGTGAGCCTGCGAGCACTGACC
TGCGCATAGACTATAAGTACAACACGGATGCCATGTCCACTGCAGTGGCCCTCAACAACGTGCAGTTCCT
GGTCCCCATAGACGGAGGAGTGACCAAGCTTCAGGCTGTGCTTCCTCCAGCAGTCTGGAATGCTGAACAA
CAAAGAATATTATGGAAGATTCCCGATATCTCCCAGAAGTCAGAAAATGGAGGCGTAGGTTCTTTACTGG
CGAGATTTCAGTTATCCGAAGGCCCGAGCAAACCTTCCCCGCTGGTTGTGCAGTTCACGAGTGAAGGAAG
TACTCTCTCTGGCTGTGACATTGAACTTGTTGGAGCAGGCTACCGGTTTTCACTCATTAAGAAGAGGTTT
GCTGCAGGAAAGTACTTGGCAGATAACTAA

Translation (639 aa):
MMEGLKKRTRKAFGIRKKEKDTDSTGSPDRDGMPSPHEPPYHSKAECAREGGKKASKKSNGAPNGFYAEI
DWERYNSPELDEEGYSIRPEEPGSTKGKHFYSSSESEEEEESHKKFNIKIKPLQSKDVLKNAATVDELKA
SIGNIALSPSPVRKSPRRSPGAIKRNLSSEEVARPRRSTPTPELTSKKPLDDTLALAPLFGPPLESAFDE
QKTEVLLDQPEIWGSGQPMNPSTESPELARPFPTGTPPPLPPKTVPATPPRTGSPLTVATGASSPARPAT
PLVPCSTTPPPPPPRPPSRPKLPPGKPGVGDVSRPFSPPIHSSSPPPIAPLARAESTSSISSTNSLSAAT
TPTVGSSRGPSPLTMGAQDTLPVAAAFTETVNAYFKGADPSKCIVKITGEMVLSFPAGITRHFANNPSPA
ALTFRVVNSSRLEHVLPNPQLLCCDNTQNDANTKEFWVNMPNLMTHLKKVSEQKPQATYYNVDMLKYQVS
AQGIQSTPLNLAVNWRCEPASTDLRIDYKYNTDAMSTAVALNNVQFLVPIDGGVTKLQAVLPPAVWNAEQ
QRILWKIPDISQKSENGGVGSLLARFQLSEGPSKPSPLVVQFTSEGSTLSGCDIELVGAGYRFSLIKKRF
AAGKYLADN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH