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Report for CCDS40440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40440.1 Public Mus musculus 8 Arl2bp 23 108 98 CCDS HistoryNCBI Gene:107566Re-query CCDS DB by CCDS ID:40440.1Re-query CCDS DB by GeneID:107566See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109527.5 ENSMUSP00000105153.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109527.5Link to Ensembl Protein Viewer:ENSMUSP00000105153.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000109527Re-query CCDS DB by Protein ID:ENSMUSP00000105153
Original member Current member NCBI NM_024269.4 NP_077231.1 Accepted alive Link to Nucleotide Sequence:NM_024269.4Link to Protein Sequence:NP_077231.1Re-query CCDS DB by Nucleotide ID:NM_024269Re-query CCDS DB by Protein ID:NP_077231Link to BLAST:NP_077231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077231.1 152 Q9D385-2 152 100% 0 0

Chromosomal Locations for CCDS 40440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94667226 94667230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94667597 94667658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94670321 94670427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94671295 94671380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94672062 94672158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94673017 94673118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGCGCTCCTCCGCCTCTGATGCAGAATTTGATGCTGTGGTTGGATGTTTAGAGGACATTATTATGGATG
ATGAGTTCCAGTTATTGCAGAGAAACTTCATGGACAAGTACTACCAGGAATTTGAAGACACAGAAGAGAA
TAAACTCACCTATACACCCATTTTTAATGAATATATCTCCCTGGTAGAGAAGTACATTGAAGAGCAGTTG
CTGGAGCGTATCCCAGGCTTCAACATGGCGGCCTTCACAACCACGCTGCAGCACCACAAAGATGAGGTGG
CTGGCGACATCTTTGACATGCTGCTCACATTCACGGATTTTCTGGCTTTCAAGGAGATGTTCCTGGACTA
CAGAGCAGAAAAGGAAGGCCGAGGACTGGACTTAAGCAGCGGCTTGGTTGTGACTTCTCTGTGTAAGTCA
TCTTCTACGCCAGCTTCCCAGAACAACCTGCGGCACTAG

Translation (152 aa):
MRSSASDAEFDAVVGCLEDIIMDDEFQLLQRNFMDKYYQEFEDTEENKLTYTPIFNEYISLVEKYIEEQL
LERIPGFNMAAFTTTLQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGRGLDLSSGLVVTSLCKS
SSTPASQNNLRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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