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Report for CCDS52599.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52599.1 Public Mus musculus 8 Sin3b 23 108 98 CCDS HistoryNCBI Gene:20467Re-query CCDS DB by CCDS ID:52599.1Re-query CCDS DB by GeneID:20467See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52599.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004494.15 ENSMUSP00000004494.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004494.15Link to Ensembl Protein Viewer:ENSMUSP00000004494.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000004494Re-query CCDS DB by Protein ID:ENSMUSP00000004494
Original member Current member NCBI NM_009188.4 NP_033214.2 Accepted alive Link to Nucleotide Sequence:NM_009188.4Link to Protein Sequence:NP_033214.2Re-query CCDS DB by Nucleotide ID:NM_009188Re-query CCDS DB by Protein ID:NP_033214Link to BLAST:NP_033214.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033214.2 1098 Q62141-4 1098 100% 0 0

Chromosomal Locations for CCDS 52599.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 72723310 72723408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72724044 72724150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72725537 72725690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72731081 72731278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72733345 72733488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72739369 72739488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72741474 72741563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72741810 72741928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72744458 72744665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72744894 72745010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72746410 72746648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72747685 72747868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72749719 72750268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72750436 72750605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72753167 72753340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72753545 72753637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72756473 72756567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72756848 72757052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 72757175 72757405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3297 nt):
ATGGCGCATGCAGGCAGCGGAGGCTCCGCGGGCCGGGGATTCGGTGGCTCCCGCTGGGGTCGTTCGGGCT
CCGGAGGGCACGAGAAGCTGCCGGTGCACGTGGAGGACGCTCTCACCTACCTCGACCAGGTGAAGATCCG
CTTTGGCAGTGACCCTGCCACCTACAACGGCTTCCTGGAGATCATGAAGGAGTTCAAAAGCCAGAGCATC
GACACTCCTGGTGTGATCAGGCGTGTGTCCCAGCTCTTCCATGAGCACCCTGACCTCATCGTGGGGTTTA
ATGCTTTCCTTCCGCTTGGATACCGTATAGACATTCCCAAGAACGGCAAGCTGAACATCCAGTCGCCGCT
GAGCAGCCAGGACAACTCCCATAGCCATGGTGACTGTGGGGAGGACTTCAAGCAGATGTCCTACAAGGAG
GACAGAGGCCAGGTGCCCCTGGAGTCTGACTCTGTGGAGTTCAACAATGCTATCAGCTATGTGAACAAGA
TCAAGACCCGCTTTCTGGACCACCCTGAGATCTACAGGTCCTTCCTGGAGATCCTACACACCTACCAGAA
GGAACAGCTGCACACTAAGGGCCGTCCATTCCGTGGCATGTCTGAGGAGGAGGTTTTCACAGAGGTGGCC
AATCTTTTCCGTGGTCAGGAGGACCTGCTGTCAGAGTTCGGACAGTTCCTGCCTGAGGCAAAGCGGTCCC
TGTTTACAGGCAATGGGTCGTGCGAGATGAACAGTGGGCAGAAGAATGAGGAGAAGAGTCTGGAACACAA
CAAGAAACGCTCTCGGCCTTCACTCCTGCGCCCTGTGTCTGCGCCAGCCAAGAAGAAGATGAAGCTCCGA
GGCACCAAAGACCTGTCCATTGCTGCCGTGGGGAAATACGGCACACTGCAGGAATTCTCCTTCTTTGACA
AGGTGCGCAGGGTGCTGAAGAGCCAGGAGGTATATGAGAACTTTCTGCGCTGCATTGCGCTCTTCAATCA
GGAGCTGGTGTCCGGGTCTGAGTTGCTGCAGCTTGTCAGTCCATTCCTGGGGAAATTTCCAGAACTCTTT
GCACAGTTCAAGTCCTTCCTAGGAGTGAAAGAGCTGTCCTTTGCACCACCTATGAGTGACCGGTCTGGAG
ATGGGATAAGCAGAGAAATTGACTATGCGTCTTGTAAGCGAATAGGATCCAGCTATCGGGCACTTCCCAA
GACCTACCAGCAGCCCAAGTGCAGCGGAAGGACTGCCATTTGCAAGGAGGTCCTGAATGATACATGGGTC
TCCTTTCCATCCTGGTCTGAAGACTCCACCTTTGTTAGCTCCAAGAAGACGCCCTACGAGGAGCAACTGC
ATCGCTGTGAGGATGAGAGATTTGAATTGGATGTTGTCCTGGAGACCAACCTGGCCACCATCCGAGTGCT
GGAGAGTGTGCAGAAGAAGTTGTCACGGATGGCTCCTGAGGACCAGGAGAAGCTCCGCCTGGATGACTGC
CTGGGTGGCACATCAGAGGTGATTCAACGCCGTGCCATACACCGCATCTATGGAGACAAGGCCCCAGAGG
TCATTGAGAGCCTGAAAAGGAACCCTGCCACCGCTGTGCCTGTCGTTCTGAAAAGGCTGAAGGCCAAGGA
GGAGGAGTGGCGGGAGGCCCAGCAGGGCTTCAACAAGATCTGGCGTGAGCAGTACGAGAAAGCATACCTC
AAGTCCCTGGACCACCAGGCTGTGAACTTCAAGCAGAATGACACCAAGGCACTGCGCTCTAAGAGCCTGC
TCAATGAGATCGAAAGTGTCTATGATGAGCACCAGGAGCAGCACTCAGAGGGCCGCAGTGCGCCTTCCAG
CGAGCCGCACCTTATCTTCGTGTATGAGGACCGACAGATCCTAGAGGACGCAGCAGCACTCATCAGCTAC
TATGTTAAGCGGCAGCCAGCCATTCAGAAAGAGGACCAGGGCACTATCCGCCAGCTGCTTCACCGTTTCC
TGCCCAGCCTGTTCTTCTCGCAGCAGTGCCCCGGCACCTCCGATGACTCTGCTGATGAGCGCGACCGGGA
CCGGGACAGCGCTGAGCCTGAGCGCCGCCGGCCCACAGATGAGAAGCCCCCTGCAGATGCATCTCCAGAA
CCGCCCAAGGTCCTGGACGATGTGTACAGTCTGTTTTTTGCCAACAACAACTGGTACTTCTTCCTGCGGC
TGCACCAGACGCTGTGCGCCCGCCTGCTCAAGATCTACCGGCAGGCGCAGAAGCAGCTGCTGGAACATCG
ACGAGAGCAGGAGAGGGAGCAGCTGCTGTGCGAGGGCCGCCGTGAGAAGGCTGCAGACCCTGCCATGGAG
CTGCGACTCAAGCAGCCTAGTGAAGTGGAGCTGGAGGAGTACTACCCGGCCTTCCTGGACATGGTGCGGA
GCCTGCTAGAGGGGAGCATCGACCCCACACAGTATGAGGACACTCTCCGTGAGATGTTCACCATCCATGC
CTACATTGGCTTCACTATGGACAAGCTAGTGCAGAACATTGCCCGCCAGCTACACCATCTGGTGAGTGAC
GACGTATGTCTGAAGGTGGTAGAGCTGTACCTGAATGAGCAGCAGCGAGGGGCAGCGGGGGGAAACCTGT
CCTCCAGATGTGTTCGTGCAGCACGGGAGACTAGCTATCAGTGGAAGGCGGAGCGCTGCATGGCAGATGA
GAACTGCTTCAAGGTAATGTTCCTGCAGCGCAGAGGTCAGGTGATCATGACCATAGAGCTCCTGGACACA
GAAGAGGCACAGACTGAGGACCCTGTGGAGGTACAGCACCTGGCTCGCTATGTGGAGCAGTATGTGGGGT
CTGAGGGTGCATCCAGCTCATCTACTGAAGGCTTCCTGCTGAAGCCGGTGTTCCTGCAGAGGAACCTGAA
GAAGTTCCGGCGTTGGCAGTGTGAGCAGGTACGTGCCATGCGCGGTGAGGCTAAGAGCTCCTGGAAGCGG
CTCATGGGCGTGGAGAGCGCTTGTGATGTGGACTGCCGGTTCCGCTTGGGCACACACAAGATGGTGTTCA
TCGTCAATTCCGAGGACTACATGTACCGCCGTGGGACACTATGCCGTGCCAAGCAGGTGCAGCCCCTGGT
GTTGTTGCGCCACCACCGGCACTTCGAGGAGTGGCATGGTCGCTGGCTGGAGGACAATGTAACTGTGGCG
GCGGCAGGGCTGGTGCAGGACTGGCTGATGGGTGAGGAAGAGGAGGACATGGTACCCTGCAAGACGCTTT
GCGAGACTGCGCATGTTCACGGGCTGCCGGTGACTCGCTACCGAGTGCAGTACAGCCGCCGCCCTGCTTC
ACCCTGA

Translation (1098 aa):
MAHAGSGGSAGRGFGGSRWGRSGSGGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSI
DTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLSSQDNSHSHGDCGEDFKQMSYKE
DRGQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVA
NLFRGQEDLLSEFGQFLPEAKRSLFTGNGSCEMNSGQKNEEKSLEHNKKRSRPSLLRPVSAPAKKKMKLR
GTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELF
AQFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWV
SFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKLRLDDC
LGGTSEVIQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYL
KSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISY
YVKRQPAIQKEDQGTIRQLLHRFLPSLFFSQQCPGTSDDSADERDRDRDSAEPERRRPTDEKPPADASPE
PPKVLDDVYSLFFANNNWYFFLRLHQTLCARLLKIYRQAQKQLLEHRREQEREQLLCEGRREKAADPAME
LRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYIGFTMDKLVQNIARQLHHLVSD
DVCLKVVELYLNEQQRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRRGQVIMTIELLDT
EEAQTEDPVEVQHLARYVEQYVGSEGASSSSTEGFLLKPVFLQRNLKKFRRWQCEQVRAMRGEAKSSWKR
LMGVESACDVDCRFRLGTHKMVFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHRHFEEWHGRWLEDNVTVA
AAGLVQDWLMGEEEEDMVPCKTLCETAHVHGLPVTRYRVQYSRRPASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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