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Report for CCDS43544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43544.1 Public Homo sapiens 7 RADIL 24 110 108 CCDS HistoryNCBI Gene:55698Re-query CCDS DB by CCDS ID:43544.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399583.4 ENSP00000382492.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399583.4Link to Ensembl Protein Viewer:ENSP00000382492.3Re-query CCDS DB by Nucleotide ID:ENST00000399583Re-query CCDS DB by Protein ID:ENSP00000382492
Original member Current member NCBI NM_018059.5 NP_060529.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018059.5Link to Protein Sequence:NP_060529.4Re-query CCDS DB by Nucleotide ID:NM_018059Re-query CCDS DB by Protein ID:NP_060529Link to BLAST:NP_060529.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060529.4 1075 Q96JH8-4 1075 100% 0 0

Chromosomal Locations for CCDS 43544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4799378 4799483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4799630 4799769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4800171 4800310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4801653 4801995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4803546 4803754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4805566 4805716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4815278 4815450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4816228 4816465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4817239 4817351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4822394 4822554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4832141 4832178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4834607 4835239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4836358 4836605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4877605 4878139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3228 nt):
ATGTTTTATGGGACGCACTTCATCATGTCCCCGCCCACCAAGAGCAAACTGAAGCGGCAGAGCCAGCTGT
TGTCCAGCATGCTGTCCCGGACGCTGAGCTACAAGTACCGGGACCTGGACTCCACCTTCTCCAGCCTGGG
CGCCAGCGATGACCCCGCCGAGCTCTCCACCCAGCTGTCGGCCCCTGGTGTCCTGAAGGTGTTTGGGGAC
AGTGTCTGCACAGGAACCCACTACAAGAGCGTCCTGGCCACCGGCACCTCCAGCGCCCGTGAGCTGGTGA
AGGAGGCGCTGGAGCGGTACGCCCTGGACCCCAGGCAGGCCGGCCAGTACGTGCTGTGTGACGTGGTGGG
CCAAGCCGGCGATGCTGGGCAGCGGTGGCAGGCCCGGTGCTTTCGGGTGTTTGGGGACAGTGAGAAGCCC
CTCTTGATCCAGGAATTATGGAAACCCCGAGAAGGTTTATCCCGGAGGTTTGAGCTGAGGAAGAGGTCGG
ACGTGGAGGAGCTGGCAGCCAAGGAGGTGGACACCATCACGGCAGGGATAAACGCCCAGGCCCGGAGGCT
GCAGCGGAGTCGCGCGAAGGGAACCCCGACCCCGGCCCTGGGGGATGCCCGGAGCTCTCCTCCACCCCGG
TTGCGCCGCACAGTCAGTGAGACCAGCCTGAGCCCAGTGAACGCCCTGCCCGCTGCCGCCCAGGGCCCCG
AGGAGCCCGGCCCCGACGCCATGCGGTACTCGCTGTACCAGTCCCCGCATCTGCTCCTTCTGCAGGGCTA
CAGCCAGCAGCACGACAGCCTGGTGTATGTGCTCAACCGGGACCGGCACACGGTGGGCCAGCGGACCCCC
TCCAGCAAGCCCAGCATCAGCCTCTCAGCCCCCGACATCCTGCCTCTACACTGCACCATCCGCCGGCAAC
CGCTCCCGGACAGCGGCCAGGCCGCGGGGAGGCTGGTCCTGGAGCCCATCCCCGGGGCGCACATCTCCGT
CAACTTCTCCGAGGTGGGGCACAGGACCGTGGTGCTGCACCACGGGGACCTGCTCTCCCTGGGGCTCTAC
TACCTGCTGCTATTCAAGGACCCCGCGCAGGCCCAGCCCCTGCCCGCCCGGGCCTTGGCGCGCCTCCGGG
CTGTGCCGCAGAGCTGCCGGCTGTGCGGGGCCGCGCTCGGGGCCCGGGGAGCCGCCTCCCCTACTCAGGC
CGCCCTGCCCCGGCGCCAGCAGCTGCTCCTGGAGTTTGAGCCCCACCTGGAGGACACGCTGCTGCAGAGG
ATCATGACGTTGATCGAGCCGGGGGGCGACGACCACAAGCTGACCCCCGCCTTCCTCCTGTGCCTCTGCA
TCCAGCACTCGGCCACCCACTTCCAGCCGGGCACATTCGGGCAGCTCCTGCTCAAGATAGCCAGGCTGAT
CCGCGAGACTGTCTGGGAGAAAACCAAAGAACTAGCAGAGAAGCAGGCGCAACTCCAGGAGCCCATCTCG
CTGGCCAGCTGCGCCATGGCTGATCTGGTTCCAGACTTGCAGCCCATTCTTTTCTGGATGTCTAACTCCA
TCGAGCTCCTGTACTTTATCCAGCAGAAATGCCCACTCTACATGCAGAGCATGGAGGAGCAGCTGGACAT
CACAGGCTCGAAGGAATCGCTGTTCTCCTGCACGCTGACGGCCAGCGAGGAGGCCATGGCGGTGCTGGAG
GAGGTGGTGCTGTACGCCTTCCAGCAGTGCGTCTACTATGTCTCCAAGTCCCTGTACATCTGCCTCCCGG
CACTCCTGGAGTGCCCGCCATTCCAGACGGAGCGCCGTGAGAGCTGGTCCTCGGCCCCCGAACTGCCCGA
GGAGCTGCGCCGCGTGGTGTCTGTGTACCAGGCAGCCCTGGACCTCCTGCGGCAGCTGCAGGTGCACCCC
GAGGTGGCCTCGCAGATGCTCGCCTACCTCTTCTTCTTCTCCGGGACACTGCTTCTCAACCAGCTCCTCG
ACAGGGGCCCCTCCCTGAGCTGCTTCCACTGGCCCAGAGGTGTCCAGGCCTGCGCCCGCCTGCAGCAGCT
CCTGGAGTGGATGCGGAGCGCCGGCTTCGGGGCGGCTGGAGAGCACTTCTTCCAGAAGCTCTCCTGCACC
CTCAACCTGCTGGCCACACCCAGGGCCCAGCTCATCCAGATGAGCTGGACAGCCCTGCGGGCTGCGTTCC
CCGCACTGAGCCCAGCACAGCTGCACCGGCTGCTGACTCACTACCAGCTGGCCTCGGCCATGGGCCCCAT
GAGCACCTGGGAGCCAGGGGCCCAGGACAGCCCCGAGGCCTTCAGGTCAGAGGATGTTCTGGAGTCCTAC
GAAAACCCCCCACCCATCGTCCTGCCCAGCGACGGCTTCCAGGTGGACTTGGAAGCCAACTGCCTGGACG
ACAGCATCTACCAGCACCTGCTCTACGTCCGCCACTTTCTGTGGGGTCTGCGGAGCAGAGCCAGCCCCGG
CAGCCCTGGCAGGCCTGGCAGTGGGGCCTCCCAGCCAGTGTGCCCCGAGGGTATGCACCACGTGGTCCTT
GACGGGCACCTGGAGGCCCCGAGCTGCCCCCTGGCTCCCAGGGACCCTGGCCCAGCAGCCCGGGAAGTGG
CCCCGGAGCGTACTCTTCCCTTGAGGGGGGCTCCCTGGGCACAGGCCCCCCCTGGAAGGCAACCCAGCCG
TGGGGGCTCCCAGGCTGGCCCCCCGCACACGGACTCGTCCTGCTTGCTCACGCCTCCCAGCACTCCACTT
GGCCCTGAGCCTGGGGACCCCGACTGGCCAGAGTCCGGCGGCCCCTGTGGAAAAGCGCTCCCAGAGAGGC
AGAGGAACGGACTCAGCGGCCTCCGGGGTGCAGCTCCGGAAGGAGACTCTGCAGCCCTTGCGGAGGAGTC
CCCTCCAGCCCCGTCCAGCCGCAGCTCCAGCACCGAGGACTTCTGCTACGTCTTCACGGTGGAGCTGGAA
CGAGGCCCCTCCGGGCTGGGGATGGGCCTGATCGACGGGATGCACACGCACCTGGGCGCCCCCGGGCTCT
ACATCCAGACCCTGCTCCCGGGCAGCCCCGCAGCGGCCGACGGGCGCCTGTCGCTGGGGGACCGTATCCT
GGAGGTGAATGGCAGCAGCCTCCTGGGCCTTGGCTACCTGAGAGCTGTGGACCTGATCCGTCATGGCGGG
AAGAAGATGCGGTTCCTGGTCGCGAAGTCCGACGTGGAAACAGCCAAGAAGATCCATTTCCGCACGCCCC
CTCTCTAG

Translation (1075 aa):
MFYGTHFIMSPPTKSKLKRQSQLLSSMLSRTLSYKYRDLDSTFSSLGASDDPAELSTQLSAPGVLKVFGD
SVCTGTHYKSVLATGTSSARELVKEALERYALDPRQAGQYVLCDVVGQAGDAGQRWQARCFRVFGDSEKP
LLIQELWKPREGLSRRFELRKRSDVEELAAKEVDTITAGINAQARRLQRSRAKGTPTPALGDARSSPPPR
LRRTVSETSLSPVNALPAAAQGPEEPGPDAMRYSLYQSPHLLLLQGYSQQHDSLVYVLNRDRHTVGQRTP
SSKPSISLSAPDILPLHCTIRRQPLPDSGQAAGRLVLEPIPGAHISVNFSEVGHRTVVLHHGDLLSLGLY
YLLLFKDPAQAQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALPRRQQLLLEFEPHLEDTLLQR
IMTLIEPGGDDHKLTPAFLLCLCIQHSATHFQPGTFGQLLLKIARLIRETVWEKTKELAEKQAQLQEPIS
LASCAMADLVPDLQPILFWMSNSIELLYFIQQKCPLYMQSMEEQLDITGSKESLFSCTLTASEEAMAVLE
EVVLYAFQQCVYYVSKSLYICLPALLECPPFQTERRESWSSAPELPEELRRVVSVYQAALDLLRQLQVHP
EVASQMLAYLFFFSGTLLLNQLLDRGPSLSCFHWPRGVQACARLQQLLEWMRSAGFGAAGEHFFQKLSCT
LNLLATPRAQLIQMSWTALRAAFPALSPAQLHRLLTHYQLASAMGPMSTWEPGAQDSPEAFRSEDVLESY
ENPPPIVLPSDGFQVDLEANCLDDSIYQHLLYVRHFLWGLRSRASPGSPGRPGSGASQPVCPEGMHHVVL
DGHLEAPSCPLAPRDPGPAAREVAPERTLPLRGAPWAQAPPGRQPSRGGSQAGPPHTDSSCLLTPPSTPL
GPEPGDPDWPESGGPCGKALPERQRNGLSGLRGAAPEGDSAALAEESPPAPSSRSSSTEDFCYVFTVELE
RGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG
KKMRFLVAKSDVETAKKIHFRTPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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