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Report for CCDS51540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51540.1 Public Mus musculus 5 Grsf1 23 108 98 CCDS HistoryNCBI Gene:231413Re-query CCDS DB by CCDS ID:51540.1Re-query CCDS DB by GeneID:231413See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113234.7 ENSMUSP00000108860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113234.7Link to Ensembl Protein Viewer:ENSMUSP00000108860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113234Re-query CCDS DB by Protein ID:ENSMUSP00000108860
Original member Current member NCBI NM_001098476.2 NP_001091946.1 Accepted alive Link to Nucleotide Sequence:NM_001098476.2Link to Protein Sequence:NP_001091946.1Re-query CCDS DB by Nucleotide ID:NM_001098476Re-query CCDS DB by Protein ID:NP_001091946Link to BLAST:NP_001091946.1

Chromosomal Locations for CCDS 51540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88662561 88662610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88663120 88663255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88664064 88664185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88665757 88665941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88670176 88670311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88671162 88671305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88672605 88672760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88673693 88673849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88675495 88675497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGAATCCAAAACTACCTACCTGGAAGACCTCCCACCACTGCCTGAGTACGAGTTGAGCCCATCCAAGC
TAGGAGACGAGGTGGATGATGTTTATCTCATTCGAGCTCAGGGGCTGCCGTGGTCCTGCACTGTGGAAGA
TGTTCTTAACTTTTTCTCAGACTGCAGAATCCGAAACAGTGAGAATGGAATACATTTCCTCCTAAATAGA
GATGGGAAACGGAGGGGCGATGCCTTAATAGAGATGGAGTCCGAGCAGGATGTACAGAAGGCCTTAGAAA
AGCACCGGATGTACATGGGGCAGCGGTATGTGGAAGTGTATGAAATAAACAACGAAGATGTGGATGCCTT
AATGAAGAGCCTGCAGGTCAAGCCTTCGCCTGTGCTCAGTGATGGTGTGGTCCGCCTGAGAGGACTTCCT
TACAGCTGCAATGAAAAGGACATTGTGGACTTCTTTGCAGGACTGAACATAGTAGACATTACTTTTGTGA
TGGACTATAGAGGGAGAAGAAAAACGGGGGAAGCCTATGTACAGTTTGAAGAACCAGAAATGGCCAACCA
AGCGCTTCTAAAGCACAGGGAAGAAATTGGTAACCGATACATAGAGATATTTCCAAGCAGAAGGAATGAA
GTTCGAACACATGTTGGATCTCATAAAGGAAAGAAAATGACATCGTCTCCTCCTACTAAATATATAACTG
AACCAGAAGTGGTATTTGAGGAACATGAAGTAAATGAAGATATTCGGCCTATGACGGCTTTTGAGAGTGA
TAAAGAGATAGAATTGCCTAAGGAGATGTCAGAAAAACTTCCAGAGGCTGTCGATTTTGGAACTCTGCCT
TCCCTGCATTTTGTCCACATGAGAGGATTGCCTTTCCAAGCCAATGCCCAAGACATTATAAATTTCTTTG
CTCCCCTGAAGCCTGTGAGAATCACCATGGAATACAGCTCCAGTGGGAAGGCCACTGGAGAAGCTGACGT
GCACTTTGATACCCATGAGGATGCTGTTGCAGCCATGCTCAAGGATCGGTCCCATGTCCAACATAGGTAT
ATTGAGCTGTTCCTAAATTCATGTCCTAAAGGAAAATAA

Translation (362 aa):
MESKTTYLEDLPPLPEYELSPSKLGDEVDDVYLIRAQGLPWSCTVEDVLNFFSDCRIRNSENGIHFLLNR
DGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNEDVDALMKSLQVKPSPVLSDGVVRLRGLP
YSCNEKDIVDFFAGLNIVDITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNRYIEIFPSRRNE
VRTHVGSHKGKKMTSSPPTKYITEPEVVFEEHEVNEDIRPMTAFESDKEIELPKEMSEKLPEAVDFGTLP
SLHFVHMRGLPFQANAQDIINFFAPLKPVRITMEYSSSGKATGEADVHFDTHEDAVAAMLKDRSHVQHRY
IELFLNSCPKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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