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Report for CCDS52495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52495.1 Public Mus musculus 8 Xkr5 23 108 98 CCDS HistoryNCBI Gene:319581Re-query CCDS DB by CCDS ID:52495.1Re-query CCDS DB by GeneID:319581See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52495.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095438.9 ENSMUSP00000093089.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095438.9Link to Ensembl Protein Viewer:ENSMUSP00000093089.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095438Re-query CCDS DB by Protein ID:ENSMUSP00000093089
Original member Current member NCBI NM_001113350.2 NP_001106821.1 Accepted alive Link to Nucleotide Sequence:NM_001113350.2Link to Protein Sequence:NP_001106821.1Re-query CCDS DB by Nucleotide ID:NM_001113350Re-query CCDS DB by Protein ID:NP_001106821Link to BLAST:NP_001106821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106821.1 676 Q5GH66 676 100% 0 0

Chromosomal Locations for CCDS 52495.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 18933494 18934605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18937227 18937338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18939068 18939237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18940613 18940822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18941945 18942129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18948559 18948742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 18950876 18950933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGCACGCGGGGCTCCTGGGGCTCTCTGCCCTGCTGCAGGCGGCCGAGCAAAGCGCGCGCCTCTGCTCCA
TAGTTTTCTACTTTGCCACGGGTCGTCTCCTCTGGGGGTGGCTGGCCCTTTCTGTCCTCCTGCCCGGCTT
CTTGGTCCAGGCCCTGAGCTTTCTGTGGTTCCGAGCAGATGGGCATCAGGGTCAGTGGTGGCTGGCGGTA
CTGCATCTTCTGCAACTTGGCGTCTGGAAGCGGCACTGGGACTCTGTGGCAACGGCTCTGTGGAAGGGAA
AGGAGGCTCCCAGCTGGGGACAGCTGCACCTGCAGGAGGCTGACCTGTCAGCCCTACGGCTCCTGGAGGC
TCTGCTGCAGACAGGGCCCCACCTGCTGCTTCAGGCTTACGTGTTCCTAGCCTCTGACTTCACAGACATT
GTGCCAGGAATCAGTGCCCTACTCTCCTGGTCTTCACTGTCCTGGGCTCTAGTGTCATACAACCGTTTCC
TGGGCATCATGAAGCCAGGCCACCATACCATGCTATGGGCTGCTCTCTTGTGCCAGCAGCTCTGGAGGAT
GGGCATGCTGGGTGCTCGTGTGCTAAGCCTGGTTCTGTTCTGCCGAGTTTACCGTGTGTGGGTTTTGGTG
GTTGGAGGTGCTCACTGGCTAGTGATGACCTTCTGGCTCGTGGCCCAGCAGAGCGACATTGTAGAGAGCA
CCTGCCACTGGAGGCTGTTCAATCTGCTGGTGGGGGCCGTGTTCATCCTCTGCTACATCAATTTCTGGGA
CAGCCCTTCCAGAAGCAGGGTGGCCAGCTTCTACTTGGTTATGCTGCTGGAGAACTCCATACTCTTACTA
CTGGCCACTGACTTTCTGCAGGGAGTACCAGGGACCAGCCTGTGGACTGTGGTGGGAGTCTTGTCTGGAT
TTCTGATTGGGTGTGCATCGCTGGTTATTTATTACAGCTTACTACACCCTAAGTCCTCAGACATCCAGCA
GAGCTTCATGAGGAAATGCTGTGGCCCCATCGAGGATAACAAACCTGAATCAGAACCTCCTCCCAGGGCC
GTGGATCCCACAGGGGAGATGCCAGACAGCTCAAGCTGGTGCCAAGAGGAAAGCTATGAGCTAACAAGTC
TAGATAAGGCCCCCAGCCCAGAGCAGAACACTGCAGAGGTGGGGCTCGGGGAGCAGAGATCTGGGGAGTC
CTCTTTCTTCAGCCACCACCACTGGCTGTTGCTGAAACTCGCTCTCAAGACAGGAAGTGTATCTAGGATC
AACGCAGCCCTCGGAGGTGACAGCCCTGGCTGCTCCTGTCCCCCTCTGCTGGGGTCGAGTCAACACTGTG
ATCTGCAGAGGAAACCCCTGTTTTCCCATCAAGACCTCCCATCCTCTCCCTGTGACCCTTTGACCTTGGA
GAAAGGGTCTGAGTACGTAGGGGCTCCGAAAGCAGAGATGGAGTCATTGGAAACTTCAAGCTATCTCTCC
TTTGCCAGCGAGCTTGAGGACAATGCAACAACCCAGAAGCCACCAGCTACCCAGGAGGACAGTCCAAAGC
TGGCTGGGTCCAAGGCTGACCTTGCAGCTCAGGGGAAGGAGACAGAAGGTCCCCTGCAGGGGAAGGAAGG
ACAGGAGAGCACAACACTGTATTTCAGTGCCGCCATGGACAGAACCACATCCCACCAAAGAGGCAGCCCA
GTAGTTCTGCGGATATCCCACTCGGAGACTCTGGTAGAGAGCAGACCTGGGCAGCCTGCGCTGCCTCAGG
CAGTCACTAAGCCCTTTCCTGTTACCGTGGCCAATATTAGTCCCATTCCAGGTAGAAACTTCCGCCCCAG
TGCAGAGCTTCCTGGAAGAGCCCCAGATAGTTCAGAGTGTGAGGAGTGGAAGGACGCGGCAAGGGACCCG
AGTATGCAGAGCTCATTGCCGAAGATGAGGCTGAAGGCAGCTGAAGAGCCCTGCTTCACATCTACCCCTA
AGTCGGAGTCCATCCAAAGGGACTACAGCTGCAGGGACAGGGTGAGACAGGAGATGAGCTTTTTCATCTG
A

Translation (676 aa):
MHAGLLGLSALLQAAEQSARLCSIVFYFATGRLLWGWLALSVLLPGFLVQALSFLWFRADGHQGQWWLAV
LHLLQLGVWKRHWDSVATALWKGKEAPSWGQLHLQEADLSALRLLEALLQTGPHLLLQAYVFLASDFTDI
VPGISALLSWSSLSWALVSYNRFLGIMKPGHHTMLWAALLCQQLWRMGMLGARVLSLVLFCRVYRVWVLV
VGGAHWLVMTFWLVAQQSDIVESTCHWRLFNLLVGAVFILCYINFWDSPSRSRVASFYLVMLLENSILLL
LATDFLQGVPGTSLWTVVGVLSGFLIGCASLVIYYSLLHPKSSDIQQSFMRKCCGPIEDNKPESEPPPRA
VDPTGEMPDSSSWCQEESYELTSLDKAPSPEQNTAEVGLGEQRSGESSFFSHHHWLLLKLALKTGSVSRI
NAALGGDSPGCSCPPLLGSSQHCDLQRKPLFSHQDLPSSPCDPLTLEKGSEYVGAPKAEMESLETSSYLS
FASELEDNATTQKPPATQEDSPKLAGSKADLAAQGKETEGPLQGKEGQESTTLYFSAAMDRTTSHQRGSP
VVLRISHSETLVESRPGQPALPQAVTKPFPVTVANISPIPGRNFRPSAELPGRAPDSSECEEWKDAARDP
SMQSSLPKMRLKAAEEPCFTSTPKSESIQRDYSCRDRVRQEMSFFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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