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Report for CCDS70575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70575.1 Public Mus musculus 14 Otx2 23 108 98 CCDS HistoryNCBI Gene:18424Re-query CCDS DB by CCDS ID:70575.1Re-query CCDS DB by GeneID:18424See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70575.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119070.7 ENSMUSP00000112532.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119070.7Link to Ensembl Protein Viewer:ENSMUSP00000112532.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119070Re-query CCDS DB by Protein ID:ENSMUSP00000112532
Original member Current member NCBI NM_001286481.1 NP_001273410.1 Accepted alive Link to Nucleotide Sequence:NM_001286481.1Link to Protein Sequence:NP_001273410.1Re-query CCDS DB by Nucleotide ID:NM_001286481Re-query CCDS DB by Protein ID:NP_001273410Link to BLAST:NP_001273410.1
Original member Current member NCBI NM_001360225.1 NP_001347154.1 Accepted alive Link to Nucleotide Sequence:NM_001360225.1Link to Protein Sequence:NP_001347154.1Re-query CCDS DB by Nucleotide ID:NM_001360225Re-query CCDS DB by Protein ID:NP_001347154Link to BLAST:NP_001347154.1
Original member Current member NCBI NM_001360226.1 NP_001347155.1 Accepted alive Link to Nucleotide Sequence:NM_001360226.1Link to Protein Sequence:NP_001347155.1Re-query CCDS DB by Nucleotide ID:NM_001360226Re-query CCDS DB by Protein ID:NP_001347155Link to BLAST:NP_001347155.1

Chromosomal Locations for CCDS 70575.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 48658706 48659326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 48661299 48661474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 48662444 48662540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGATGTCTTATCTAAAGCAACCGCCTTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACT
TGCTGCATCCCTCCGTGGGCTACCCCGGGCCCTGGGCTTCTTGTCCTGCAGCCACCCCCCGGAAACAGCG
AAGGGAGAGGACGACATTTACTAGGGCACAGCTCGACGTTCTGGAAGCTCTGTTTGCCAAGACCCGGTAC
CCAGACATCTTCATGAGGGAAGAGGTGGCACTGAAAATCAACTTGCCAGAATCCAGGGTGCAGGTATGGT
TTAAGAATCGAAGAGCTAAGTGCCGCCAACAGCAGCAGCAGCAGCAGAATGGAGGTCAGAACAAAGTGAG
GCCTGCCAAGAAGAAGAGCTCTCCAGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAGTTCAGT
CCCCCCTCTAGTACCTCAGTCCCAACCATTGCCAGCAGCAGTGCTCCAGTGTCTATCTGGAGCCCAGCGT
CCATCTCCCCACTGTCTGACCCCTTGTCCACTTCCTCCTCCTGCATGCAGAGGTCCTATCCCATGACCTA
TACTCAGGCTTCAGGTTATAGTCAAGGCTATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGA
TCTTATTTGACCCCTATGCATCACCAGCTTCCTGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATG
CTGTTACCAGCCATCTCAATCAGTCCCCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGG
TTTTAACTCAACCACTGATTGCTTGGATTATAAGGACCAAACTGCCTCTTGGAAGCTTAACTTCAATGCT
GACTGCTTGGATTATAAAGATCAGACGTCCTCATGGAAATTCCAGGTTTTGTGA

Translation (297 aa):
MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRY
PDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKSSPAREVSSESGTSGQFS
PPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCG
SYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNA
DCLDYKDQTSSWKFQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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