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Report for CCDS49473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49473.1 Public Mus musculus 14 Otx2 23 108 98 CCDS HistoryNCBI Gene:18424Re-query CCDS DB by CCDS ID:49473.1Re-query CCDS DB by GeneID:18424See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49473.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118578.8 ENSMUSP00000113690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118578.8Link to Ensembl Protein Viewer:ENSMUSP00000113690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118578Re-query CCDS DB by Protein ID:ENSMUSP00000113690
Original member Current member EBI ENSMUST00000122009.7 ENSMUSP00000113930.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122009.7Link to Ensembl Protein Viewer:ENSMUSP00000113930.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122009Re-query CCDS DB by Protein ID:ENSMUSP00000113930
Original member Current member EBI ENSMUST00000227404.1 ENSMUSP00000154066.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227404.1Link to Ensembl Protein Viewer:ENSMUSP00000154066.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227404Re-query CCDS DB by Protein ID:ENSMUSP00000154066
Original member Current member EBI ENSMUST00000226501.1 ENSMUSP00000154264.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226501.1Link to Ensembl Protein Viewer:ENSMUSP00000154264.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226501Re-query CCDS DB by Protein ID:ENSMUSP00000154264
Original member Current member NCBI NM_001286482.1 NP_001273411.1 Accepted alive Link to Nucleotide Sequence:NM_001286482.1Link to Protein Sequence:NP_001273411.1Re-query CCDS DB by Nucleotide ID:NM_001286482Re-query CCDS DB by Protein ID:NP_001273411Link to BLAST:NP_001273411.1
Original member Current member NCBI NM_001286483.1 NP_001273412.1 Accepted alive Link to Nucleotide Sequence:NM_001286483.1Link to Protein Sequence:NP_001273412.1Re-query CCDS DB by Nucleotide ID:NM_001286483Re-query CCDS DB by Protein ID:NP_001273412Link to BLAST:NP_001273412.1
Original member Current member NCBI NM_144841.5 NP_659090.1 Accepted alive Link to Nucleotide Sequence:NM_144841.5Link to Protein Sequence:NP_659090.1Re-query CCDS DB by Nucleotide ID:NM_144841Re-query CCDS DB by Protein ID:NP_659090Link to BLAST:NP_659090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273411.1 289 P80206 289 99.654% 0 1
NP_001273412.1 289 P80206 289 99.654% 0 1
NP_659090.1 289 P80206 289 99.654% 0 1

Chromosomal Locations for CCDS 49473.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 48658706 48659326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 48661299 48661450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 48662444 48662540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGATGTCTTATCTAAAGCAACCGCCTTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACT
TGCTGCATCCCTCCGTGGGCTACCCCGCCACCCCCCGGAAACAGCGAAGGGAGAGGACGACATTTACTAG
GGCACAGCTCGACGTTCTGGAAGCTCTGTTTGCCAAGACCCGGTACCCAGACATCTTCATGAGGGAAGAG
GTGGCACTGAAAATCAACTTGCCAGAATCCAGGGTGCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCC
GCCAACAGCAGCAGCAGCAGCAGAATGGAGGTCAGAACAAAGTGAGGCCTGCCAAGAAGAAGAGCTCTCC
AGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAGTTCAGTCCCCCCTCTAGTACCTCAGTCCCA
ACCATTGCCAGCAGCAGTGCTCCAGTGTCTATCTGGAGCCCAGCGTCCATCTCCCCACTGTCTGACCCCT
TGTCCACTTCCTCCTCCTGCATGCAGAGGTCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAGTCA
AGGCTATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCTTATTTGACCCCTATGCATCAC
CAGCTTCCTGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCTGTTACCAGCCATCTCAATCAGT
CCCCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGGTTTTAACTCAACCACTGATTGCTT
GGATTATAAGGACCAAACTGCCTCTTGGAAGCTTAACTTCAATGCTGACTGCTTGGATTATAAAGATCAG
ACGTCCTCATGGAAATTCCAGGTTTTGTGA

Translation (289 aa):
MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREE
VALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKSSPAREVSSESGTSGQFSPPSSTSVP
TIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHH
QLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQ
TSSWKFQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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