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Report for CCDS57631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57631.1 Public Mus musculus 8 Irx3 23 108 98 CCDS HistoryNCBI Gene:16373Re-query CCDS DB by CCDS ID:57631.1Re-query CCDS DB by GeneID:16373See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000175795.3 ENSMUSP00000135488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175795.3Link to Ensembl Protein Viewer:ENSMUSP00000135488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175795Re-query CCDS DB by Protein ID:ENSMUSP00000135488
Original member Current member NCBI NM_008393.3 NP_032419.2 Accepted alive Link to Nucleotide Sequence:NM_008393.3Link to Protein Sequence:NP_032419.2Re-query CCDS DB by Nucleotide ID:NM_008393Re-query CCDS DB by Protein ID:NP_032419Link to BLAST:NP_032419.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032419.2 507 P81067-1 507 100% 0 0

Chromosomal Locations for CCDS 57631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91798922 91798976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91799411 91799477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91799673 91800798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91800965 91801240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGTCCTTCCCCCAGCTCGGATACCAGTACATCCGCCCTCTCTACCCACCCGAACGCCCGGGAGCTGCGG
GCGGCGGTGGAGGCGGCAGTAGCGCTGGGGGCCGGAGCGGTCCCGGCGCCGGAGCCTCCGAGTTGGCCGC
CTCTGGGTCCCTATCCAATGTGCTTTCATCAGTGTACGGGGCACCCTACGCCGCTGCCGCAGCTGCCGCC
GCCGCCGCTCAGGGTTACGGCGCCTTCCTGCCCTACGCCACGGAGCTGCCCATCTTCCCACAGCTGGGCG
CTCAGTATGAGCTGAAGGACAGCCCTGGCGTCCAGCATCCGGCCACGGCCGCCGCGTTCCCGCACCCGCA
CCCCGCCTTCTACCCCTATGGCCAGTACCAGTTCGGGGACCCGTCCCGTCCCAAGAACGCCACCCGGGAA
AGCACGAGCACGCTCAAGGCCTGGCTCAACGAGCACCGCAAGAACCCGTACCCCACCAAGGGCGAGAAGA
TCATGTTGGCCATCATCACCAAGATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCG
CCTCAAGAAGGAGAACAAGATGACGTGGGCTCCCCGTAGTCGCACGGACGAGGAGGGCAATGCTTATGGG
AGCGAGCGGGAGGAGGAGGACGAAGAGGAAGACGAGGAAGAGAGCAAACGCGAGCTGGAGATGGAGGAGG
AGGAGCTCGCAGGAGAGGAGGAGGACACGGGGGGCGAGGGGCTGGCCGACGACGACGAGGATGAGGAGAT
CGATTTGGAAAACTTAGACAGCGCGGCAGCCGGGTCGGAGCTGACCCTGGCTGGGGCGGCGCACAGGAAC
GGCGACTTCGGCCTGGGACCCATTTCGGACTGCAAAACTAGCGACTCGGACGACAGCTCCGAAGGCTTGG
AGGACCGACCACTGTCGGTCCTGAGCCTGGCCCCACCGCCACCGCCCGTGGCCAGGGCTCCTGCATCTCC
ACCTTCTCCACCCTCCAGCCTGGATCCCTGCGCTCCGGCCCCGGCGCCCTCCTCCGCCCTCCAGAAGCCC
AAGATCTGGTCACTGGCCGAGACGGCCACCAGCCCGGACAACCCACGCCGCTCGCCTCCCGGAGCCGGAG
GTTCGCCTCCCGGCGCAGCCGTTGCGCCCCCGACGCTGCAGCTCTCGCCCGCGGCCGCTGCAGCGGCTGC
AGCGGCACACAGACTCGTGTCGGCGCCGCTTGGCAAATTCCCCGCTTGGACCAACAGGCCTTTCCCAGGG
CCGCCGGCCGGTCCGCGGCCGCACCCGCTGTCCATGCTGGGCTCGGCCCCACAGCACCTGCTGGGACTTC
CCGGAGCCGCAGGTCATCCCGCTGCGGCCGCAGCCGCCTATGCTCGGCCTGCCGAGCCGGAGAGTGGAAC
AGATCGCTGTAGTGCCTTGGAAGTGGAGAAAAAGTTACTCAAGACAGCTTTCCAGCCGGTGCCAAGGCGG
CCACAGAACCATCTGGACGCTGCTCTGGTCTTATCAGCTCTCTCCTCGTCTTAA

Translation (507 aa):
MSFPQLGYQYIRPLYPPERPGAAGGGGGGSSAGGRSGPGAGASELAASGSLSNVLSSVYGAPYAAAAAAA
AAAQGYGAFLPYATELPIFPQLGAQYELKDSPGVQHPATAAAFPHPHPAFYPYGQYQFGDPSRPKNATRE
STSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRSRTDEEGNAYG
SEREEEDEEEDEEESKRELEMEEEELAGEEEDTGGEGLADDDEDEEIDLENLDSAAAGSELTLAGAAHRN
GDFGLGPISDCKTSDSDDSSEGLEDRPLSVLSLAPPPPPVARAPASPPSPPSSLDPCAPAPAPSSALQKP
KIWSLAETATSPDNPRRSPPGAGGSPPGAAVAPPTLQLSPAAAAAAAAAHRLVSAPLGKFPAWTNRPFPG
PPAGPRPHPLSMLGSAPQHLLGLPGAAGHPAAAAAAYARPAEPESGTDRCSALEVEKKLLKTAFQPVPRR
PQNHLDAALVLSALSSS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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