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Report for CCDS37880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37880.1 Public Mus musculus 19 Tesmin 23 108 98 CCDS HistoryNCBI Gene:17771Re-query CCDS DB by CCDS ID:37880.1Re-query CCDS DB by GeneID:17771See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025840.15 ENSMUSP00000025840.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025840.15Link to Ensembl Protein Viewer:ENSMUSP00000025840.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000025840Re-query CCDS DB by Protein ID:ENSMUSP00000025840
Original member Current member NCBI NM_001039657.2 NP_001034746.1 Accepted alive Link to Nucleotide Sequence:NM_001039657.2Link to Protein Sequence:NP_001034746.1Re-query CCDS DB by Nucleotide ID:NM_001039657Re-query CCDS DB by Protein ID:NP_001034746Link to BLAST:NP_001034746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034746.1 475 Q9WTJ6-1 475 100% 0 0

Chromosomal Locations for CCDS 37880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3388950 3389333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3392103 3392261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3393925 3394045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3395920 3395993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3396963 3397054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3402486 3402576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3404049 3404186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3404933 3405108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3406918 3407110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAGGACGCGCTGCTCGGCGCCATGACTGGCCCCGAAGACGAGCTGGGCGCCGAGCTGTTCGGGTCAG
AGCGTGTGTTCGCGGACGGGCTGGCGCTGAGCCCCGCAGGCGGTGCGGCCGATCGGGATGAGTTGCCGGT
TCTGGCCGACGCCTACCTGGGCGCCACCGAGCCAGGGGAGCCGCTGCTGCGTGCGCTCAGCCCCCCGCCG
GGCGCTGAGGTACCGGCCGCCCTGCTCGGCGACTTCCCGGGGCTGCCCGAGCTCCGCAGCCCAGACGACG
CCGCTCCGCCTCCCGCCTACAGCGTGCACGTGTTATCGTCGTTACTTCCCGGTGCTCGCGGGCCCGCGCT
GTTGCCGCTAAGCGCAGGAGTGCGCGTGATCCCAGTTGAAATCAAAGAAGCAGGTGGTAGTGTGCCAGGC
GGCAGCCCTGAAGACGCAGCTTTCCAGGCCCCTCTGGCTCAGGAATCCTGTTGCAAGTTCCCATCATCCC
AGGAGGCAGAGGAGGCCTCCAGCTGCCCTCGGAAGAAAGACTCCAGCCCCATGGTGATTTGTCAGCTGAA
AGGAGGCGCCCAGATGCTCTGCATAGACAACTGTGGCGCGAGGGAGCTCAAAGCGCTCCATCTGCTTCCT
CAGTACGATGACCAGAGCAGTTTCCCTCAGTCAGAGCTCCCTAAGCCAATGACAACTTTAGTGGGAAGAC
TTCTGCCAGTACCAGCGAAGTTAAATCTCATCACACAGGTTGATAATGGAGCTCTCCCATCAGCTGTCAA
TGGGGCTGCCTTTCCCTCTGGACCTGCTCTGCAAGGGCCACCCAAAATAACTCTGTCTGGGTACTGTGAC
TGCTTCTCCAGCGGGGACTTCTGCAACAGCTGCAGCTGCAACAACCTGCGCCATGAGCTCGAGCGCTTCA
AAGCCATAAAGGCGTGTCTTGATAGAAATCCTGAAGCTTTCCAACCAAAAATGGGGAAAGGCCGTCTGGG
AGCTGCTAAACTTCGACACAGCAAAGGGTGCAACTGTAAGCGCTCAGGCTGCCTGAAGAACTACTGTGAG
TGCTATGAGGCCAAAATCATGTGTTCTTCCATTTGCAAATGCATTGCTTGCAAAAACTATGAAGAAAGTC
CAGAACGAAAAATGCTGATGAGCACACCCCACTACATGGAGCCTGGGGACTTTGAGAGCAGCCATTATTT
GTCCCCAGCCAAGTTCTCAGGACCTCCAAAACTGAGAAAAAATAGGCAGGCCTTCTCCTGTATCTCCTGG
GAAGTAGTGGAGGCCACATGTGCCTGCCTGCTGGCCCAGGGTGAGGAAGCAGAGCAGGAGCACTGTTCCC
CAAGCTTGGCTGAGCAGATGATCCTGGAGGAGTTTGGAAGGTGCCTGTCGCAGATTCTCCACATCGAGTT
CAAGTCCAAGGGGCTGAAAATTGAGTAG

Translation (475 aa):
MEDALLGAMTGPEDELGAELFGSERVFADGLALSPAGGAADRDELPVLADAYLGATEPGEPLLRALSPPP
GAEVPAALLGDFPGLPELRSPDDAAPPPAYSVHVLSSLLPGARGPALLPLSAGVRVIPVEIKEAGGSVPG
GSPEDAAFQAPLAQESCCKFPSSQEAEEASSCPRKKDSSPMVICQLKGGAQMLCIDNCGARELKALHLLP
QYDDQSSFPQSELPKPMTTLVGRLLPVPAKLNLITQVDNGALPSAVNGAAFPSGPALQGPPKITLSGYCD
CFSSGDFCNSCSCNNLRHELERFKAIKACLDRNPEAFQPKMGKGRLGAAKLRHSKGCNCKRSGCLKNYCE
CYEAKIMCSSICKCIACKNYEESPERKMLMSTPHYMEPGDFESSHYLSPAKFSGPPKLRKNRQAFSCISW
EVVEATCACLLAQGEEAEQEHCSPSLAEQMILEEFGRCLSQILHIEFKSKGLKIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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