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Report for CCDS18377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18377.1 Public Mus musculus 4 Patj 23 108 98 CCDS HistoryNCBI Gene:12695Re-query CCDS DB by CCDS ID:18377.1Re-query CCDS DB by GeneID:12695See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030290.7 ENSMUSP00000030290.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030290.7Link to Ensembl Protein Viewer:ENSMUSP00000030290.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030290Re-query CCDS DB by Protein ID:ENSMUSP00000030290
Original member Current member NCBI NM_001005787.1 NP_001005787.1 Accepted alive Link to Nucleotide Sequence:NM_001005787.1Link to Protein Sequence:NP_001005787.1Re-query CCDS DB by Nucleotide ID:NM_001005787Re-query CCDS DB by Protein ID:NP_001005787Link to BLAST:NP_001005787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005787.1 582 Q63ZW7-4 582 100% 0 0

Chromosomal Locations for CCDS 18377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 98546983 98547004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98568939 98569135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98591933 98592024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98611068 98611140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98623603 98623689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98638691 98638762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98650368 98650485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98652404 98652558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98667576 98667659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98674194 98674387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98676173 98676320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98677241 98677327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98681114 98681222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98682044 98682081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98687333 98687455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 98688126 98688275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGTCCACGGGGGCTTCCCAGAAAAGATCAGGCAAAGATATGCAGACCTGCCGGGAGAACTACACATTA
TCGAACTGGAAAAGGACAAGAATGGACTGGGGCTCAGTCTCGCTGGCAATAAGGACAGGTCACGGATGAG
CATCTTCGTGGTGGGGATTAATCCGGAGGGACCTGCTGCTGCAGACGGACGGATGCGGATTGGAGACGAG
CTGCTAGAGATAAACAATCAGATTCTTTATGGAAGAAGTCATCAGAACGCATCTGCCATTATTAAGACTG
CCCCAACCAGGGTCAAACTGGTTTTCATTAGAAACGAAGATGCAGTCAGTCAGATGGCCGTCGCTCCCTT
CCCGGAGCTATCACATTCTCCATCGCCTGTTGAGGATCTGGGTGGCACTGAACTTGTCAGTAGTGAAGAG
GAGAGCAGTGTGGATGCTAAACACCTGCCTGAACCAGAAAGCTCCAAACCGGAAGACCTGTCCCAGGTGG
TTGATGACAACATGGTGGCAGAGCAGCAGAAGGAATCGGAGTCACCTGACAGTGCTGCCTGCCAGATAAA
ACAGCAGACATATTCAACACAAGTCTCCTCCAGCTCGCAAGATAGCCCATCGTCACCGGCTCCATTGTGT
CAGTCAGCACATGCAGACGTCACAGGCTCTGGTAACTTCCAGGCTCCTCTCCCAGTGGACCCTGCTCCAC
TCTCGGTGGACCCTGCAACATGTCCCATCGTCCCTGGCCAGGAAATGATCATAGAAATATCCAAGGGACG
CTCCGGGCTCGGGCTCAGCATTGTTGGAGGAAAAGACACACCTTTGGATGCTATAGTTATCCATGAAGTC
TATGAAGAAGGTGCAGCTGCCAGAGATGGAAGATTATGGGCTGGAGACCAGATATTAGAGGTTAATGGGG
TTGATCTGCGGAGCTCCAGCCATGAAGAAGCCATCACAGCCCTGAGGCAGACCCCCCAGAAGGTGCGGCT
GGTGGTATACAGAGATGAAGCACAGTACAGAGACGAGGAGAACTTGGAGGTGTTCCTTGTGGACCTGCAG
AAGAAGACTGGCCGAGGACTAGGCCTGAGCATTGTTGGGAAACGGAGTGGAAGTGGAGTGTTTATTTCTG
ACATTGTGAAAGGCGGGGCCGCAGACCTCGATGGGAGGTTAATTCGAGGAGACCAGATCTTGTCTGTGAA
TGGAGAGGACATGAGACACGCCTCACAGGAGACAGTGGCCACCATCCTGAAGTGTGTCCAGGGCCTTGTC
CAGCTGGAGATTGGGAGACTCCGCGCCGGTTCCTGGGCCGCCTCTCGGAAGACCTCGCAGAACAGCCAGG
GGGATCAGCACAGTGCGCACAGCAGCTGTCGGCCTTCCTTTGCCCCAGTCATCACCAGCCTACAAAACCT
GGTTGGCACAAAAAGATCTTCAGATCCTCCACAGAAATGCACAGAGGAGGAACCAAGGACTGTAGAGATA
ATCAGAGAGCTCAGCGATGCCCTTGGGATCAGTATCGCTGGAGGAAAAGGGAGTCCTTTAGGAGATATCC
CCATATTTATTGCCATGATTCAGGCCAACGGAGTGGCCGCACGGACCCAGAAGCTTAAGGTTGGAGATCG
GATTGTGAGCATTAATGGACAACCTCTGGATGGACTGTCTCACACAGATGCCGTTAATCTACTGAAGAAT
GCCTTCGGGCGCATTATCCTGCAGGTATTTCGATCAATGGAGAACCAGCTGGCAGAGGCAGATAAATGA

Translation (582 aa):
MVHGGFPEKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDE
LLEINNQILYGRSHQNASAIIKTAPTRVKLVFIRNEDAVSQMAVAPFPELSHSPSPVEDLGGTELVSSEE
ESSVDAKHLPEPESSKPEDLSQVVDDNMVAEQQKESESPDSAACQIKQQTYSTQVSSSSQDSPSSPAPLC
QSAHADVTGSGNFQAPLPVDPAPLSVDPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLDAIVIHEV
YEEGAAARDGRLWAGDQILEVNGVDLRSSSHEEAITALRQTPQKVRLVVYRDEAQYRDEENLEVFLVDLQ
KKTGRGLGLSIVGKRSGSGVFISDIVKGGAADLDGRLIRGDQILSVNGEDMRHASQETVATILKCVQGLV
QLEIGRLRAGSWAASRKTSQNSQGDQHSAHSSCRPSFAPVITSLQNLVGTKRSSDPPQKCTEEEPRTVEI
IRELSDALGISIAGGKGSPLGDIPIFIAMIQANGVAARTQKLKVGDRIVSINGQPLDGLSHTDAVNLLKN
AFGRIILQVFRSMENQLAEADK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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