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Report for CCDS28172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28172.1 Public Mus musculus 16 Arhgap31 23 108 98 CCDS HistoryNCBI Gene:12549Re-query CCDS DB by CCDS ID:28172.1Re-query CCDS DB by GeneID:12549See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023487.4 ENSMUSP00000023487.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023487.4Link to Ensembl Protein Viewer:ENSMUSP00000023487.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000023487Re-query CCDS DB by Protein ID:ENSMUSP00000023487
Original member Current member NCBI NM_020260.2 NP_064656.2 Accepted alive Link to Nucleotide Sequence:NM_020260.2Link to Protein Sequence:NP_064656.2Re-query CCDS DB by Nucleotide ID:NM_020260Re-query CCDS DB by Protein ID:NP_064656Link to BLAST:NP_064656.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064656.2 1425 A6X8Z5 1425 100% 0 0

Chromosomal Locations for CCDS 28172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38601425 38603815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38606602 38606879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38608903 38609451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38610757 38610819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38618143 38618267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38620903 38621092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38623812 38623954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38624547 38624654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38625551 38625633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38636897 38637041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38640247 38640349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38712574 38712673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4278 nt):
ATGAAGAACAAGGGTGCCAAGCAGAAGCTGAAACGAAAGGGAGCCGCCAGTGCGTTTGGATGTGACCTGA
CGGAGTATCTGGAAAGTTCGGGACAGGATGTTCCATATGTGCTGAAGAGCTGTGCTGAATTCATAGAGAC
TCACGGCATTGTGGATGGAATCTATCGCCTCTCGGGCATCACCTCAAACATCCAGCGGCTGAGGCAAGAG
TTTGGCTCAGATCAATGCCCAGATCTGACAAGGGAAGTGTACCTTCAAGACATCCACTGTGTGGGCTCCT
TGTGCAAGCTCTACTTCCGGGAGCTGCCCAACCCCCTCCTGACCTACGAGCTCTATGAGAAATTCACGGA
AGCAGTGTCTCATCGCCCAGAAGAAGGCCAGCTGGCCAGAATCCAGAATGTTATCCTGGAGCTTCCCCCA
CCCCATTATAGGACCTTGGAATACCTGATTCGACACCTGGCCCACATCGCCTCATTCAGCAGCAAGACCA
ACATGCACGCCAGGAACCTGGCCCTGGTGTGGGCCCCAAACCTCCTCAGGAGTAAGAAAATCGAAGCCAC
TATTTGCAATGGAGATGCGGCGTTTCTGGCAGTCCGGGTCCAGCAGGTGGTGATTGAGTTCATATTAAAT
CACGCTGATCAAATCTTCAATGGCGGTGCTCCAGGGGCTCTGCAGCAGGATGAAAGCCGTACTATCACAA
AGAGCCTGACCTTGCCAGCCTTGTCCCTGCCCATGAAGTTGGTAAGCCTGGAGGAGGCTCAGGCCCGAAG
CTTGGCGACAAACCACCCTGCTCGGAAGGAAAGACGAGAGAACAGCCTGCCCGAGATCGTCCCTCCTCCC
TTCCACACCGTCCTTGAGTTACCAGACAACAAGAGAAAGCTTTCCAGCAAATCAAAGAAGTGGAAATCGA
TATTTAACCTGGGACGTTCTGGATCGGACTCGAAGTCCAAGCTGAGTAGAAACGGGAGTGTGTTCGTGAG
AGGCCAGAGGCTGTCAGTGGAAAAGGCTACTATCCGGCCAGCAAAAAGCATGGACTCACTGTGTTCGGTG
CCTGTGGAAGGGAAAGAAAACAAAGGAAATTTCAGTCGAACAGTCACCACTGGGGGATTTTTCATTCCAG
CCACAAAAATGCACGCGAGCAGCACCGGAAGCTCCTGTGACCTCAGCAAGGAGGGTGAATGGGGTCAGGA
GGGGATGCCCGCAGGGGCTGAGGGGGGCTGCGAGGTGGGCGGTCAGATCCGGCCACTGCCTGAGCAGCTG
AAGGTGTTCCGCCCCATCGGAGACCCTGAGAGCGAGCAGTCCGCCCCAAAGCTTCTCGGGATGTTCTACA
CCTCCAGCGACAGTCCTGGCAAATCTGTCTTCACAAGCAGCCTGTTCCAGATGGAACCCTCACCCCGCCA
CCAGCGAAAGGCGCTCAACATCTCCGAGCCCTTCGCCGTGTCTGTGCCACTCCGCGTGTCCGCCGTCATC
AGTACCAACAGCACCCCGTGCAGGACACCCCCCAAAGAGCTACAGTCTCTCTCCAGCCTCGAAGAGTTTT
CTTTCCAAGGTTCAGAGAGTGGAGGATGGCCAGAAGAAGAGAAGCCCCTGGGGGCTGAGTCTTTTCCAGG
CTCTGTTACTAAGAAGGCAGCTACCGAGGACACCAAGCCAGAACCTGAAGTCCCGGGGAGAGCAGAATGT
AGCCAAAGCCCTCCCCTGGACCCAGGCACCCAAGTGGAGAAGAAAACCTTGCATGTATCCCTGGGCTCTC
AAGTATCAAAGGAAGCAGAGAAGCGGCCAAAGGCTGAGAAGGTGATGGAGGAGAGCCAGGGTGCTAGCCA
GCCGAAGCCCAGCACTCCACAAGAGAGCCTCGGGGCTGGGACTGAACCATTGATTCTCCACGAGATGGAT
GAAGAAGACCTGGCTCAGGCCTTGATCTGGCCTGAGATTCAACAGGAACTGAAAATCATTGAATCAGAGG
AGGAGTTCTCTTCCTTGCCACCCGCTGCTCAGAAGACAAGCCCGATTCCTGAGTCAAGCCCAGCCCCATT
TCCCTTCCCAGAAGCCCCTGGGAGCTTGCCTAGTAGCTCTGCTCCTCGGGAGGTGTGGACTAGGGACGCA
GCCAATCAGAGCATACAGGAAGCTGCTATCCTCACTGACAGAGAGAAGCTAGAGCCAGTCTGCAGCCTCC
TCGAGTCAGAGTCTCAGCAGGAGCTCAGCCCAGACCCAGCCAGTCTAGCGCCTCTGGAAATGCTTCTGTT
TGAGAAGGTATCTTCTCCGGCTAGGATAGAGATAGGAGGCCCAAGGAATCTCTCTCCCCCTCTTACTCCT
GCTCCTCCTCCCCCCACACCTCTGGAGGAGGAGCCTGAAGTCCTGCTGTCAAAGGAAGGTCCTGACAGGG
AAGATGCAGCCAGGGATTCCAGGACAGATGTCTACACAGAGCAGCCAACCCCCAAAGAGAGCCCTGGCAT
CCCTACCCCCTGTCAGAGAGAGGAAGCTATTGCAAGCCCAAATGAGAAGCAAAACGCAAGGCATGCTGTT
CCTGAGAACAAAGGCCCTGGTCTTCCAAGCCCAACCAAAGAGGTTGACATCATCCCACAAGAGGAGGGAG
GTGCTCCGCATTCAGCACAAGAGCCTTCAGACTGTGACGAAGATGACACTGTGACGGACCCTGCCCAGCA
TGGCCTGGAGATGGTGGAACCCTGGGAGGAACCCCAGTGGGTGACCAGTCCCCTTCATTCTCCCACCTTG
AAAGAAGTTCAGGAGTCCCAGACGCAAGGCTCCCAGGGCCACCGATTAGAGAGGAGACTTTGCCACAGGC
CCAGCCTTCGCCAGAGCCATTCTCTCGATAGTAAAACCACTGGAAACAGCCACTGGACTCTTGAGGCGCC
CTTCTCCAGCAGTTGTGCCAATCTGGAAACAGAGAGGAACTATGAGCCTCTGCAGCCCCCGGCAGCCAGG
ACCAAGATTGCCGGATTGGAAGAGAAAGCCCTAAAAGCCTTCAGAGAGTTCTCTGGCCTGAAAGGGTTAG
AGGTTCTTCCCAGTCAGAAGGGACCATCTGGTATACAACCCAAACCAGTAGAAACCAACTTCATGGGTTT
AGCAGAGGGAAAGGAGCAGGAACCACAACTGGAACTTAGCAACCGTCAGATGAAACACAGTGATGTTCCC
GGGCCAGATAGCAGCAAGGAGAGTTCACCGAGGGCTCAAGACAGCACCTTACCTGGGGAACATCCCTTAC
AGTTACAGCTTAAGAACACTGAGTGTGGGCCCTCAAAAGGGAAACACAGGCCGTCTTCCCTCAACCTGGA
CTCTGCCACTCCCATAGCTGACCTTTTCCGACTTGAGAATGGGGCTCCCTTTAGCTCACCTGGAATAGAG
CTCTCTGAACTAGGAGACACCAAGGTCACCTGGATGAGCTCCTCTCACTGCAAAGCAGCCCCCTGGAATT
CCCAGGACACGCAGGACCTGGACATTGTTGCCCACACCCTGACAGGCCGCAGGAATTCGGCTCCTGTAAG
TGTGTCAGCTGTGAGAACCTCCTTCATGGTCAAAATGTGTCAGGCCAAGGCAGTCCCTGTCATCCCACCC
AAGATCCAATACACACAGATCCCACAGCCCCTGCCCTCTCAGAGCACAGGGGAGGGAGGGGCTCAGCCTC
TGGAGAGAAGCCAGGAAGAACCTGGTTCAACCCCTGAGATCCCTCAGAAATCCACCAAAGATGATTCTCC
CTCCTCCCTGGGAAGCCCAGAGGAAGAGCAACCAAAGCAAGAGACAGGAGCCTCCGCATCCCGGAGGCAG
GCCAGCATTACATCCTGCATGTATGAGGGGTCCTCCTGCTCTCCAGAACCAAGTGCATCCACTCTGGCCT
CCACACAGGATGCGGTGGTGCAATGCAGAAAACGCACATCAGAGACAGAGCCATCAGGAGACAACCTTCT
TTCTTCCAAACTGGAGCGAGCATCTGGGGGTCCTAAAGCTTTCCACAGGTCAAGGCCAGGAAGACCTCAG
AGCCTAATCTTATTCCCTATCATGGACCATCTACCTTCCTCACCCACAGTGATAGATTCCAAGGTCCTAC
TGTCCCCTATCAGGAGCCCTACTCAGACAGTTTCCCCTGGTCTTCTCTGTGGAGAGTTGGCCGAAAACAC
ATGGATCACACCAGAAGGGGTCACGCTTAGGAATAAAATGACCATCCCTAAGAATGGCCAAAGACTCGAG
ACTTCGACAAGCTGTTTTTACCAGCCCCAGCGGAGATCCGTGATTCTGGATGGAAGAAGTGGGAGACAGA
TAGAATGA

Translation (1425 aa):
MKNKGAKQKLKRKGAASAFGCDLTEYLESSGQDVPYVLKSCAEFIETHGIVDGIYRLSGITSNIQRLRQE
FGSDQCPDLTREVYLQDIHCVGSLCKLYFRELPNPLLTYELYEKFTEAVSHRPEEGQLARIQNVILELPP
PHYRTLEYLIRHLAHIASFSSKTNMHARNLALVWAPNLLRSKKIEATICNGDAAFLAVRVQQVVIEFILN
HADQIFNGGAPGALQQDESRTITKSLTLPALSLPMKLVSLEEAQARSLATNHPARKERRENSLPEIVPPP
FHTVLELPDNKRKLSSKSKKWKSIFNLGRSGSDSKSKLSRNGSVFVRGQRLSVEKATIRPAKSMDSLCSV
PVEGKENKGNFSRTVTTGGFFIPATKMHASSTGSSCDLSKEGEWGQEGMPAGAEGGCEVGGQIRPLPEQL
KVFRPIGDPESEQSAPKLLGMFYTSSDSPGKSVFTSSLFQMEPSPRHQRKALNISEPFAVSVPLRVSAVI
STNSTPCRTPPKELQSLSSLEEFSFQGSESGGWPEEEKPLGAESFPGSVTKKAATEDTKPEPEVPGRAEC
SQSPPLDPGTQVEKKTLHVSLGSQVSKEAEKRPKAEKVMEESQGASQPKPSTPQESLGAGTEPLILHEMD
EEDLAQALIWPEIQQELKIIESEEEFSSLPPAAQKTSPIPESSPAPFPFPEAPGSLPSSSAPREVWTRDA
ANQSIQEAAILTDREKLEPVCSLLESESQQELSPDPASLAPLEMLLFEKVSSPARIEIGGPRNLSPPLTP
APPPPTPLEEEPEVLLSKEGPDREDAARDSRTDVYTEQPTPKESPGIPTPCQREEAIASPNEKQNARHAV
PENKGPGLPSPTKEVDIIPQEEGGAPHSAQEPSDCDEDDTVTDPAQHGLEMVEPWEEPQWVTSPLHSPTL
KEVQESQTQGSQGHRLERRLCHRPSLRQSHSLDSKTTGNSHWTLEAPFSSSCANLETERNYEPLQPPAAR
TKIAGLEEKALKAFREFSGLKGLEVLPSQKGPSGIQPKPVETNFMGLAEGKEQEPQLELSNRQMKHSDVP
GPDSSKESSPRAQDSTLPGEHPLQLQLKNTECGPSKGKHRPSSLNLDSATPIADLFRLENGAPFSSPGIE
LSELGDTKVTWMSSSHCKAAPWNSQDTQDLDIVAHTLTGRRNSAPVSVSAVRTSFMVKMCQAKAVPVIPP
KIQYTQIPQPLPSQSTGEGGAQPLERSQEEPGSTPEIPQKSTKDDSPSSLGSPEEEQPKQETGASASRRQ
ASITSCMYEGSSCSPEPSASTLASTQDAVVQCRKRTSETEPSGDNLLSSKLERASGGPKAFHRSRPGRPQ
SLILFPIMDHLPSSPTVIDSKVLLSPIRSPTQTVSPGLLCGELAENTWITPEGVTLRNKMTIPKNGQRLE
TSTSCFYQPQRRSVILDGRSGRQIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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