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Report for CCDS71725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71725.1 Public Mus musculus 6 Glcci1 23 108 98 CCDS HistoryNCBI Gene:170772Re-query CCDS DB by CCDS ID:71725.1Re-query CCDS DB by GeneID:170772See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71725.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161217.7 ENSMUSP00000124167.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161217.7Link to Ensembl Protein Viewer:ENSMUSP00000124167.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161217Re-query CCDS DB by Protein ID:ENSMUSP00000124167
Original member Current member NCBI NM_001286729.1 NP_001273658.1 Accepted alive Link to Nucleotide Sequence:NM_001286729.1Link to Protein Sequence:NP_001273658.1Re-query CCDS DB by Nucleotide ID:NM_001286729Re-query CCDS DB by Protein ID:NP_001273658Link to BLAST:NP_001273658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273658.1 350 Q8K3I9-3 350 100% 0 0

Chromosomal Locations for CCDS 71725.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8537948 8537968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8558500 8558586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8573185 8573298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8579587 8579739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8582580 8582790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8591545 8591665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8592907 8593252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGAGAGATAAAGCCACTCAGACACCTAGTTGCTGGGCAGAAGAGGGAGCAGAAAAACGATCACATCAGC
GCTCTGCATCATGGGGAAGTGCTGATCAACTGAAAGAGATTGCCAAACTTAGGCAACAGCTACAACGCAG
CAAGCAAAGTAGTCGGCATAGTAAAGAGAAGGACAGACAGTCACCTCTCCATGGCAACCACATAACAATC
AGTCATACTCAGGCTATTGGATCAAGATCAGTCCCTATGCCTCTGTCAAACATATCAGTGCCAAAATCAT
CTGTTTCCCGTGTACCCTGCAATGTAGAAGGAATAAGTCCTGAATTGGAAAAGGTATTCATCAAAGAAAA
CAATGGAAAGGAAGAAGTGTCCAAGCCATTGGATATACCAGATGGTCGAAGAGCTCCGCTCCCTGCTCAC
TACAGGAGCAGTAGTACTCGAAGCATAGATACCCAGACACCTTCTGTCCAAGAGCGCAGCAGTAGCTGCA
GCAGCCACTCCCCTTGTGTGTCCCCATTTTGTCCTCCGGAATCCCAGGATGGAAGTCCTTGTTCAACAGA
AGATTTGCTCTATGATCGTGATAAAGACAGTGGGAGTAGCTCACCGTTACCCAAGTATGCTTCATCTCCC
AAACCCAACAACAGCTACATGTTCAAACGGGAGCCCCCAGAGGGATGTGAGCGGGTGAAGGTCTTTGAGG
AAATGGCGTCTCGTCAGCCTATCTCGGCCCCTCTCTTTTCATGTCCTGACAAAAACAAGGTTAATTTCAT
CCCAACCGGATCAGCTTTCTGTCCTGTAAAACTTCTAGGCCCTCTCTTACCTGCCTCTGACCTGATGCTC
AAGAACTCCCCTAATTCTGGCCAGAGCTCGGCTCTGGCAACACTGACCGTAGAGCAGCTTTCCTCCCGGG
TTTCCTTCACATCTCTCTCTGATGACACCAGCACAGCCGACTCCCTGGAGCCCTCTGCCCAGCAGCCATC
TCAGCAGCAGCAGCTCCTACAGGACTTGCAGGTGGAGGAACACGTCTCCACTCAGAACTATGTGATGATC
TAA

Translation (350 aa):
MRDKATQTPSCWAEEGAEKRSHQRSASWGSADQLKEIAKLRQQLQRSKQSSRHSKEKDRQSPLHGNHITI
SHTQAIGSRSVPMPLSNISVPKSSVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRAPLPAH
YRSSSTRSIDTQTPSVQERSSSCSSHSPCVSPFCPPESQDGSPCSTEDLLYDRDKDSGSSSPLPKYASSP
KPNNSYMFKREPPEGCERVKVFEEMASRQPISAPLFSCPDKNKVNFIPTGSAFCPVKLLGPLLPASDLML
KNSPNSGQSSALATLTVEQLSSRVSFTSLSDDTSTADSLEPSAQQPSQQQQLLQDLQVEEHVSTQNYVMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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