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Report for CCDS73578.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73578.1 Public Homo sapiens 13 CKAP2 24 110 108 CCDS HistoryNCBI Gene:26586Re-query CCDS DB by CCDS ID:73578.1Re-query CCDS DB by GeneID:26586See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73578.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378034.7 ENSP00000367273.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378034.7Link to Ensembl Protein Viewer:ENSP00000367273.2Re-query CCDS DB by Nucleotide ID:ENST00000378034Re-query CCDS DB by Protein ID:ENSP00000367273
Original member Current member NCBI NM_001286687.2 NP_001273616.1 Accepted alive Link to Nucleotide Sequence:NM_001286687.2Link to Protein Sequence:NP_001273616.1Re-query CCDS DB by Nucleotide ID:NM_001286687Re-query CCDS DB by Protein ID:NP_001273616Link to BLAST:NP_001273616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273616.1 494 Q8WWK9-4 494 100% 0 0

Chromosomal Locations for CCDS 73578.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52455557 52455626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52456523 52456607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52460899 52460974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52461058 52461926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52462363 52462567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52465295 52465474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGAGCACACCGGCCGTGCCCCAGGACCTGCAGCTGCCCCCGAGTCAGAGGGCGCAGTCCGCATTCAAAG
AGCAAAGAAGACAAAAACTCAAGGAACATCTGTTGAGAAGAAAAACGCTTTTTGCATACAAGCAGGAAAA
TGAGATGTTATCCAGTAGAGATCAGAGAGTTGTGACATCTGAGGACCAAGTTCAAGAAGGGACTAAAGTG
CTGAAACTTAAAACAAAAATGGCTGATAAAGAAAACATGAAGAGACCTGCAGAGAGCAAAAATAATACAG
TGGTGGGGAAACATTGTATTCCTTTAAAACCTTCAAATGAACTAACCAATTCAACTGTAGTAATTGACAC
ACATAAACCTAAGGATAGTAATCAAACTCCGCATTTGTTACTAACTGAAGATGATCCCCAAAGTCAACAT
ATGACATTAAGCCAGGCATTTCACCTTAAAAACAATAGTAAAAAGAAACAAATGACTACAGAAAAACAAA
AGCAAGATGCTAACATGCCCAAGAAACCTGTGCTTGGATCTTATCGTGGCCAGATTGTTCAGTCTAAGAT
TAATTCATTTAGAAAACCTCTACAAGTCAAAGATGAGAGTTCTGCAGCAACAAAGAAACTTTCAGCCACT
ATACCTAAAGCCACAAAACCTCAGCCTGTAAACACCAGCAGTGTAACAGTGAAAAGTAATAGATCCTCCA
ATATGACTGCCACTACTAAATTTGTGAGCACTACATCTCAGAACACACAACTTGTGCGACCTCCTATTAG
AAGTCATCACAGTAATACCCGGGACACTGTGAAACAAGGCATCAGTAGAACTTCTGCCAATGTTACAATC
CGGAAAGGGCCTCATGAAAAAGAACTATTACAATCAAAAACAGCTTTATCTAGTGTCAAAACCAGTTCTT
CTCAAGGTATAATAAGAAATAAGACTCTATCAAGATCCATAGCATCTGAAGTTATAGCCAGGCCTGCTTC
ATTGTCTAATGATAAACTGATGGAAAAGTCAGAGCCCGTTGACCAGCGAAGACATACTGCAGGAAAAGCA
ATTGTTGATAGTAGATCAGCTCAGCCCAAAGAAACCTCGGAAGAGAGAAAAGCTCGTCTGAGTGAGTGGA
AAGCTGGCAAAGGAAGAGTGCTAAAAAGGCCCCCTAATTCAGTAGTTACTCAGCATGAGCCTGCAGGACA
AAATGAAAAACCAGTTGGGTCTTTTTGGACTACCATGGCAGAAGAAGATGAACAAAGATTATTTACTGAA
AAAGTAAACAACACATTTTCTGAATGCCTGAACTTGATTAATGAGGGATGTCCAAAAGAAGATATACTGG
TCACACTGAATGACCTGATTAAAAATATTCCAGATGCCAAAAAGCTTGTTAAGTATTGGATATGTCTTGC
ACTTATTGAACCAATCACAAGTCCTATTGAAAATATTATTGCAATCTATGAGAAAGCCATTCTGGCAGGG
GCTCAGGTAAGATAA

Translation (494 aa):
MSTPAVPQDLQLPPSQRAQSAFKEQRRQKLKEHLLRRKTLFAYKQENEMLSSRDQRVVTSEDQVQEGTKV
LKLKTKMADKENMKRPAESKNNTVVGKHCIPLKPSNELTNSTVVIDTHKPKDSNQTPHLLLTEDDPQSQH
MTLSQAFHLKNNSKKKQMTTEKQKQDANMPKKPVLGSYRGQIVQSKINSFRKPLQVKDESSAATKKLSAT
IPKATKPQPVNTSSVTVKSNRSSNMTATTKFVSTTSQNTQLVRPPIRSHHSNTRDTVKQGISRTSANVTI
RKGPHEKELLQSKTALSSVKTSSSQGIIRNKTLSRSIASEVIARPASLSNDKLMEKSEPVDQRRHTAGKA
IVDSRSAQPKETSEERKARLSEWKAGKGRVLKRPPNSVVTQHEPAGQNEKPVGSFWTTMAEEDEQRLFTE
KVNNTFSECLNLINEGCPKEDILVTLNDLIKNIPDAKKLVKYWICLALIEPITSPIENIIAIYEKAILAG
AQVR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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