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Report for CCDS51062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51062.1 Public Mus musculus 3 Fnbp1l 23 108 98 CCDS HistoryNCBI Gene:214459Re-query CCDS DB by CCDS ID:51062.1Re-query CCDS DB by GeneID:214459See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 51062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162947.2 ENSMUSP00000124947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162947.2Link to Ensembl Protein Viewer:ENSMUSP00000124947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162947Re-query CCDS DB by Protein ID:ENSMUSP00000124947
Original member Current member NCBI NM_001114665.2 NP_001108137.1 Accepted alive Link to Nucleotide Sequence:NM_001114665.2Link to Protein Sequence:NP_001108137.1Re-query CCDS DB by Nucleotide ID:NM_001114665Re-query CCDS DB by Protein ID:NP_001108137Link to BLAST:NP_001108137.1

Chromosomal Locations for CCDS 51062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122542105 122542283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122544544 122544692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122546300 122546394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122546943 122547075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122549156 122549265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122552136 122552150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122556412 122556570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122557903 122558106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122559020 122559166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122560833 122560961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122563835 122563939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122568753 122568815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122569595 122569742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122570891 122570944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122590128 122590243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122619530 122619553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1830 nt):
ATGAGCTGGGGCACCGAGCTGTGGGATCAGTTCGACAGCTTAGATAAGCATACCCAATGGGGAATTGACT
TCTTGGAAAGATATGCCAAGTTTGTTAAAGAGAGAATTGAAATTGAACAGAACTATGCGAAACAATTGAG
AAATCTGGTTAAGAAGTACTGTCCCAAACGCTCCTCCAAAGATGAAGAGCCAAGGTTTACTTCATGTATC
GCCTTTTTTAACATCCTTAATGAGTTAAACGACTATGCAGGACAGCGAGAGGTAGTAGCAGAAGAAATGG
CGCACAGAGTATATGGTGAATTAATGAGATATGCCCATGATCTGAAAACGGAAAGAAAAATGCATCTCCA
AGAAGGACGAAAAGCTCAACAATACCTTGACATGTGTTGGAAACAGATGGATAATAGTAAAAAGAAGTTT
GAAAGAGAATGTAGAGAAGCGGAGAAAGCACAGCAGAGTTATGAGAGGTTGGATAATGACACCAATGCCA
CCAAGGCAGATGTTGAAAAGGCCAAACAGCAGTTGAACCTTCGTACGCATATGGCTGATGAGAATAAAAA
TGAATATGCTGCACAGCTGCAAAATTTTAATGGAGAACAGCACAAACATTTTTATGTGGTAATTCCTCAG
ATTTACAAGCAACTACAAGAAATGGATGAACGAAGGACAATTAAACTCAGTGAATGTTACAGAGGGTTTG
CAGACTCAGAACGCAAAGTTATTCCTATCATCTCAAAATGTTTAGAAGGAATGATTCTTGCAGCAAAATC
AGTTGATGAAAGAAGAGATTCTCAAATGGTAGTAGACTCCTTCAAGTCTGGCTTTGAACCTCCAGGAGAC
TTTCCATTTGAAGATTACAGTCAGCACATTTACAGAACCATTTCTGACGGGACCATCAGTGCAGCCAAAC
AGGAGAGTGGCAAGATGGATTCCAAGTCCACAGTGGGGAAGGCCAAGGGCAAGCTGTGGCTCTTTGGAAA
GAAGCCAAAGCCACAGTCCCCACCCTTAACCCCTACTAGTTTATTCACATCCAGTACTCCTAATGGGTCC
CAGTTTCTCACACTCTCCATTGAGCCCGTGCATTATTGTATGAATGAAATAAAAACAGGGAAGCCCAGAA
TTCCTTCTTTCAGAAGCCTCAAAAGAGGGTGGTCGATGAAGATGGGCCCAGCACTAGAAGATTTCAGTCA
TTTGCCACCAGAGCAGAGGCGGAAGAAGTTACAGCAGCGCATTGACGAGCTTAACCGAGGGCTGCAGAAG
GAAGCAGACCAAAAAGAAGCACTCAACAAAATGAAGGATGTGTATGAGAAAAATCCACAGATGGGGGATC
CAGGAAGTCTGCAGCCTAAATTAGCAGAGACCATGAATAACATTGACCGCTTACGAATGGAAATCCACAA
GAATGAGGCATGGCTCTCTGAAGTTGAAGGCAAAACAGGTATAAGAGGTGACAGAAGACACAGCAGTGAC
ATAAATCATCTTGTGACACAGGGACGAGAAAGCCCTGAGGGAAGTTACACTGATGATGCAAACCAAGAAG
TTCGTGGGCCACCCCAACAACATGGCCACCACAGTGAGTTTGATGATGAGTTCGAAGATGATGATCCCCT
GCCTGCTATTGGACACTGCAAAGCAATCTACCCTTTTGATGGGCATAATGAAGGTACTCTGGCAATGAAA
GAAGGTGAAGTTCTGTACATTATTGAGGAGGACAAAGGTGATGGATGGACAAGAGCTCGGAGACAGAACG
GTGAAGAAGGCTACGTTCCCACAACATACATAGATGTTACTCTAGAGAAAAGCAGTAAAGGTGCAGTAAC
TTATATCTAA

Translation (609 aa):
MSWGTELWDQFDSLDKHTQWGIDFLERYAKFVKERIEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCI
AFFNILNELNDYAGQREVVAEEMAHRVYGELMRYAHDLKTERKMHLQEGRKAQQYLDMCWKQMDNSKKKF
ERECREAEKAQQSYERLDNDTNATKADVEKAKQQLNLRTHMADENKNEYAAQLQNFNGEQHKHFYVVIPQ
IYKQLQEMDERRTIKLSECYRGFADSERKVIPIISKCLEGMILAAKSVDERRDSQMVVDSFKSGFEPPGD
FPFEDYSQHIYRTISDGTISAAKQESGKMDSKSTVGKAKGKLWLFGKKPKPQSPPLTPTSLFTSSTPNGS
QFLTLSIEPVHYCMNEIKTGKPRIPSFRSLKRGWSMKMGPALEDFSHLPPEQRRKKLQQRIDELNRGLQK
EADQKEALNKMKDVYEKNPQMGDPGSLQPKLAETMNNIDRLRMEIHKNEAWLSEVEGKTGIRGDRRHSSD
INHLVTQGRESPEGSYTDDANQEVRGPPQQHGHHSEFDDEFEDDDPLPAIGHCKAIYPFDGHNEGTLAMK
EGEVLYIIEEDKGDGWTRARRQNGEEGYVPTTYIDVTLEKSSKGAVTYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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