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Report for CCDS19771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19771.1 Public Mus musculus 5 Mospd3 23 108 98 CCDS HistoryNCBI Gene:68929Re-query CCDS DB by CCDS ID:19771.1Re-query CCDS DB by GeneID:68929See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19771.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037620.13 ENSMUSP00000040828.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037620.13Link to Ensembl Protein Viewer:ENSMUSP00000040828.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037620Re-query CCDS DB by Protein ID:ENSMUSP00000040828
Original member Current member EBI ENSMUST00000111007.7 ENSMUSP00000106636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111007.7Link to Ensembl Protein Viewer:ENSMUSP00000106636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111007Re-query CCDS DB by Protein ID:ENSMUSP00000106636
Original member Current member NCBI NM_001254762.1 NP_001241691.1 Accepted alive Link to Nucleotide Sequence:NM_001254762.1Link to Protein Sequence:NP_001241691.1Re-query CCDS DB by Nucleotide ID:NM_001254762Re-query CCDS DB by Protein ID:NP_001241691Link to BLAST:NP_001241691.1
Original member Current member NCBI NM_030037.2 NP_084313.1 Accepted alive Link to Nucleotide Sequence:NM_030037.2Link to Protein Sequence:NP_084313.1Re-query CCDS DB by Nucleotide ID:NM_030037Re-query CCDS DB by Protein ID:NP_084313Link to BLAST:NP_084313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001241691.1 235 Q8BGG6 235 100% 0 0
NP_084313.1 235 Q8BGG6 235 100% 0 0

Chromosomal Locations for CCDS 19771.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137597022 137597053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137597151 137597315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137599594 137599823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137599977 137600052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137600271 137600475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGCGCCGTGGGGCGCCCCAGGACCAGGAGCTGGTGGGTCCGGGGGCCCCTGGGCGGGGGTCCCGGGGCT
CCCCTCCTTCCTCAGGACCCGTTGTCCCGGTGCTGGTCTTTCCCCCGGATCTAGTATTCAGGGCGGACCA
GAGAAGTGGACCCCGGCAGCTGCTGACCCTCTACAACCCCACGGGAACTGCGCTTCGCTTCCGAGTTCTG
TGCACAGCACCTGCCAAATACACGGTATTCGATGCAGAGGGATATGTGAAGCCTCAGTCCTGCATTGACA
TTGTGATACGGCACGTGGCCCCCGTCCCCAGCCACTATGACGTCCAGGACAGATTCCGCATTGAGCTGTC
TGAGGAGGGGACTGAGGGACGAGTGGTTGGAAGAAAAGACATCACCTCTGTTCTTCGAGCCCCAGCGTAC
CCCCTGGAGCTTCAGGGACATTCTGAGCCAACGCCCAACCCAGGGCCTCCTGTGTGGACAGGACTGACCC
CAGCCAGACATCTTCAGGAGAATGCCCCCCAGCAGCTGGCCACCAGCTCCTTCCTGCTCTTCTTGCTGGC
AGGCGTCATCTCTGTGGCCTTCCTGCTCCTACCACTGCAGGATGAGCTTGGCAGCCAGCTGCCTCAAGTC
CTGCACGTGTCCCTGGGACAGAAGCTGGTTGCGGCCTACGTCTTAGGCCTCCTCACCATGGTGCTCCTCC
GGACCTGA

Translation (235 aa):
MRRGAPQDQELVGPGAPGRGSRGSPPSSGPVVPVLVFPPDLVFRADQRSGPRQLLTLYNPTGTALRFRVL
CTAPAKYTVFDAEGYVKPQSCIDIVIRHVAPVPSHYDVQDRFRIELSEEGTEGRVVGRKDITSVLRAPAY
PLELQGHSEPTPNPGPPVWTGLTPARHLQENAPQQLATSSFLLFLLAGVISVAFLLLPLQDELGSQLPQV
LHVSLGQKLVAAYVLGLLTMVLLRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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