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Report for CCDS24404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24404.1 Public Mus musculus 11 Pgam2 23 108 98 CCDS HistoryNCBI Gene:56012Re-query CCDS DB by CCDS ID:24404.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24404.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020768.3 ENSMUSP00000020768.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020768.3Link to Ensembl Protein Viewer:ENSMUSP00000020768.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020768Re-query CCDS DB by Protein ID:ENSMUSP00000020768
Original member Current member NCBI NM_018870.3 NP_061358.1 Accepted alive Link to Nucleotide Sequence:NM_018870.3Link to Protein Sequence:NP_061358.1Re-query CCDS DB by Nucleotide ID:NM_018870Re-query CCDS DB by Protein ID:NP_061358Link to BLAST:NP_061358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061358.1 253 O70250 253 100% 0 0

Chromosomal Locations for CCDS 24404.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5801673 5801839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5802999 5803179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 5803275 5803688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGACCACCCACCGCCTAGTAATGGTTCGCCACGGTGAGAGCTTATGGAACCAAGAGAACCGTTTCTGTG
GC
TGGTTTGATGCAGAGCTGAGTGAGAAGGGAGCAGAGGAGGCCAAGCGGGGGGCCACCGCTATCAAAGA
T
GCCAAGATAGAGTTTGACATCTGCTACACGTCGGTGCTGAAGCGGGCAATCCGCACCCTTTGGACCATC
CTG
GATGTTACGGACCAAATGTGGGTGCCCGTGGTGCGTACCTGGCGCCTCAATGAGCGGCACTATGGTG
GC
CTCACAGGCCTCAATAAGGCTGAGACGGCTGCAAAGCACGGGGAGGAGCAGGTGAAGATCTGGAGGCG
T
TCCTTTGACACCCCACCACCACCCATGGATGAGAAACACAACTACTACACCTCCATCAGCAAGGACCGC
CGC
TATGCAGGCTTGAAGCCTGAGGAGCTGCCTACCTGTGAAAGTCTCAAGGACACCATTGCCCGGGCTT
TG
CCCTTCTGGAATGAGGAGATCGCACCTAAGATTAAGGCTGGCCAGAGAGTGCTTATTGCAGCCCATGG
G
AACAGCCTTCGGGGCATTGTGAAACATCTGGAAGGGATGTCCGACCAGGCCATCATGGAGCTGAACCTG
CCC
ACTGGAATCCCCATTGTGTATGAGCTGGACCAGAACCTGAAGCCCACCAAGCCCATGAGGTTCCTGG
GA
GACGAAGAGACGGTTCGGAAGGCCATGGAAGCTGTTGCTGCCCAGGGAAAGGCGAAGTGA


Translation (253 aa):
MTTHRLVMVRHGESLWNQENRFCGWFDAELSEKGAEEAKRGATAIKDAKIEFDICYTSVLKRAIRTLWTI
L
DVTDQMWVPVVRTWRLNERHYGGLTGLNKAETAAKHGEEQVKIWRRSFDTPPPPMDEKHNYYTSISK
DR
R
YAGLKPEELPTCESLKDTIARALPFWNEEIAPKIKAGQRVLIAAHGNSLRGIVKHLE
GMSDQAIMELNL
P
TGIPIVYELDQNLKPTKPMRFLGDEETVRKAMEAVAAQGKAK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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