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Report for CCDS40629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40629.1 Public Mus musculus 9 Btg4 23 108 98 CCDS HistoryNCBI Gene:56057Re-query CCDS DB by CCDS ID:40629.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40629.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114431.3 ENSMUSP00000110074.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114431.3Link to Ensembl Protein Viewer:ENSMUSP00000110074.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114431Re-query CCDS DB by Protein ID:ENSMUSP00000110074
Original member Current member EBI ENSMUST00000213680.1 ENSMUSP00000149181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213680.1Link to Ensembl Protein Viewer:ENSMUSP00000149181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213680Re-query CCDS DB by Protein ID:ENSMUSP00000149181
Original member NCBI NM_019493.4 NP_062366.2 Updated not alive Link to Nucleotide Sequence:NM_019493.4Link to Protein Sequence:NP_062366.2Re-query CCDS DB by Nucleotide ID:NM_019493Re-query CCDS DB by Protein ID:NP_062366
Current member NCBI NM_019493.5 NP_062366.2 Accepted alive Link to Nucleotide Sequence:NM_019493.5Link to Protein Sequence:NP_062366.2Re-query CCDS DB by Nucleotide ID:NM_019493Re-query CCDS DB by Protein ID:NP_062366Link to BLAST:NP_062366.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062366.2 250 O70552 250 100% 0 0

Chromosomal Locations for CCDS 40629.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 51116532 51116704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51117148 51117285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51117828 51118026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51119112 51119354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGAGAGACGAAATTGCAACAGCAGTTTTTTTTGTCACAAGATTGGTGAAAAAGCATGAGAAACTGAGTA
CTCAACAGATAGAAACCTTTGCACTAAAGCTGATGACCATCTTGTTTGAAAAGTACAGAGGTCACTGGCA
CCCTGACTGCCCTTCCAAGGGGCAGGCTTTTAGGTGTATCAGGATAAACAACAATGAGAATAAAGACCCT
GTTTTAGAAAGGGCTTGTGCTGAGAGTAATGTGAATTTTTTTCATCTGGGACTTCCAAAGGAGATGACCA
TATGGGTCGATCCCTATGAGGTGTGCTGTAGGTATGGTGAGAAAAAGCATCCCTTTACAATTGCTTCTTT
TAAAGGTAGATGGGAGAACTGGGAGTTGGCTCAGCATGTCAGCTGTGCAGTTAACAGAGCCACGGGAGAC
TGCTCCTCTGGCACATCTTCTGATGAAGAAAGCTGCAGCAGGGAGGCCCAGATCATCCCCAAAGTGAACA
ACCCAAAGAGCGTCTACCAGGTTGAAAATTTCAAACAGTCATTGCAGCCGTGGTTCTGCCTCCCCCGTAG
AAAGCATTTGGCAGATGGTCGTGGGTTCCTCCCGGGGGCTGCTTGCCACCCAGTGCCCAAGAGCTCTAAG
TGGTGCCGGCCAGCTTCGCGCAGGGTGGACAGATATCACTGGGTCAACGCACAACTGTTCAGTGGTCAGA
CAGCACCAGGAGAGCCTGGAGAAGAGGCCTTGTCTTCCCTAAAGCAAAAATGA

Translation (250 aa):
MRDEIATAVFFVTRLVKKHEKLSTQQIETFALKLMTILFEKYRGHWHPDCPSKGQAFRCIRINNNENKDP
VLERACAESNVNFFHLGLPKEMTIWVDPYEVCCRYGEKKHPFTIASFKGRWENWELAQHVSCAVNRATGD
CSSGTSSDEESCSREAQIIPKVNNPKSVYQVENFKQSLQPWFCLPRRKHLADGRGFLPGAACHPVPKSSK
WCRPASRRVDRYHWVNAQLFSGQTAPGEPGEEALSSLKQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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