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Report for CCDS30128.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30128.1 Public Mus musculus X Plac1 23 108 98 CCDS HistoryNCBI Gene:56096Re-query CCDS DB by CCDS ID:30128.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30128.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074861.8 ENSMUSP00000074404.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074861.8Link to Ensembl Protein Viewer:ENSMUSP00000074404.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074861Re-query CCDS DB by Protein ID:ENSMUSP00000074404
Original member Current member EBI ENSMUST00000114843.8 ENSMUSP00000110492.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114843.8Link to Ensembl Protein Viewer:ENSMUSP00000110492.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114843Re-query CCDS DB by Protein ID:ENSMUSP00000110492
Original member Current member EBI ENSMUST00000174390.1 ENSMUSP00000133862.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174390.1Link to Ensembl Protein Viewer:ENSMUSP00000133862.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174390Re-query CCDS DB by Protein ID:ENSMUSP00000133862
Original member NCBI NM_001357802.1 NP_001344731.1 Updated not alive Link to Nucleotide Sequence:NM_001357802.1Link to Protein Sequence:NP_001344731.1Re-query CCDS DB by Nucleotide ID:NM_001357802Re-query CCDS DB by Protein ID:NP_001344731
Current member NCBI NM_001357802.2 NP_001344731.1 Accepted alive Link to Nucleotide Sequence:NM_001357802.2Link to Protein Sequence:NP_001344731.1Re-query CCDS DB by Nucleotide ID:NM_001357802Re-query CCDS DB by Protein ID:NP_001344731Link to BLAST:NP_001344731.1
Original member Current member NCBI NM_019538.5 NP_062411.1 Accepted alive Link to Nucleotide Sequence:NM_019538.5Link to Protein Sequence:NP_062411.1Re-query CCDS DB by Nucleotide ID:NM_019538Re-query CCDS DB by Protein ID:NP_062411Link to BLAST:NP_062411.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344731.1 173 Q9JI83 173 100% 0 0
NP_062411.1 173 Q9JI83 173 100% 0 0

Chromosomal Locations for CCDS 30128.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 53070310 53070831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGAACCTTCGCAAGTTCCTGGGAGGCACTGTCTTAGTCGCCTTCATGCTCTTCAGCTACTCGGAGCAAA
ACCAAGTGAATGTGCTGTGCTCGACAGATTGGTTCATGGTCACCGTTCACCCCTTCTTGCTGAATAATGA
TGTGTATGTTCATTTTTACGAGGTGCACCTGGGCCTTGGTTGCCCTCCCAATCATGTTCACCCACATTTC
TACCAGTTTCACTACCGCGTTACCGAATGTGGCATCCGCATCAAGGCTGTCTCTCCAGATGTCGTCATCT
ATAGCTCTGAGATTCACTATGCTTCCAAGGGCTCATCAACGAAATATGTGATTCCCGTGTCCTGTGCTGC
CCCTCGCCGGTCCCCTTGGCTCACTAAGCCCTACTCCGCGAAAGCACCTAGCAACAACATGGGTGCGACT
CCGAAGAATGATACTTCCTACCACGTGTTCACCTTGCCAGAGCCTAGCGAACAACCCAACTGCAGCTGCC
CACCTTATGTCTACAATCAAAAGAGCATGTAA

Translation (173 aa):
MNLRKFLGGTVLVAFMLFSYSEQNQVNVLCSTDWFMVTVHPFLLNNDVYVHFYEVHLGLGCPPNHVHPHF
YQFHYRVTECGIRIKAVSPDVVIYSSEIHYASKGSSTKYVIPVSCAAPRRSPWLTKPYSAKAPSNNMGAT
PKNDTSYHVFTLPEPSEQPNCSCPPYVYNQKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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