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Report for CCDS11551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11551.1 Public Homo sapiens 17 SPOP 24 110 108 CCDS HistoryNCBI Gene:8405Re-query CCDS DB by CCDS ID:11551.1Re-query CCDS DB by GeneID:8405See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11551.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347630.6 ENSP00000240327.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347630.6Link to Ensembl Protein Viewer:ENSP00000240327.2Re-query CCDS DB by Nucleotide ID:ENST00000347630Re-query CCDS DB by Protein ID:ENSP00000240327
Original member Current member EBI ENST00000393328.6 ENSP00000377001.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393328.6Link to Ensembl Protein Viewer:ENSP00000377001.2Re-query CCDS DB by Nucleotide ID:ENST00000393328Re-query CCDS DB by Protein ID:ENSP00000377001
Original member Current member EBI ENST00000503676.5 ENSP00000420908.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503676.5Link to Ensembl Protein Viewer:ENSP00000420908.1Re-query CCDS DB by Nucleotide ID:ENST00000503676Re-query CCDS DB by Protein ID:ENSP00000420908
Original member Current member EBI ENST00000514121.6 ENSP00000424119.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514121.6Link to Ensembl Protein Viewer:ENSP00000424119.2Re-query CCDS DB by Nucleotide ID:ENST00000514121Re-query CCDS DB by Protein ID:ENSP00000424119
Original member Current member EBI ENST00000504102.6 ENSP00000425905.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504102.6Link to Ensembl Protein Viewer:ENSP00000425905.1Re-query CCDS DB by Nucleotide ID:ENST00000504102Re-query CCDS DB by Protein ID:ENSP00000425905
Original member Current member EBI ENST00000509079.6 ENSP00000426986.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509079.6Link to Ensembl Protein Viewer:ENSP00000426986.2Re-query CCDS DB by Nucleotide ID:ENST00000509079Re-query CCDS DB by Protein ID:ENSP00000426986
Original member Current member EBI ENST00000665825.1 ENSP00000499562.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000665825.1Link to Ensembl Protein Viewer:ENSP00000499562.1Re-query CCDS DB by Nucleotide ID:ENST00000665825Re-query CCDS DB by Protein ID:ENSP00000499562
Original member Current member NCBI NM_001007226.1 NP_001007227.1 Accepted alive Link to Nucleotide Sequence:NM_001007226.1Link to Protein Sequence:NP_001007227.1Re-query CCDS DB by Nucleotide ID:NM_001007226Re-query CCDS DB by Protein ID:NP_001007227Link to BLAST:NP_001007227.1
Original member Current member NCBI NM_001007227.1 NP_001007228.1 Accepted alive Link to Nucleotide Sequence:NM_001007227.1Link to Protein Sequence:NP_001007228.1Re-query CCDS DB by Nucleotide ID:NM_001007227Re-query CCDS DB by Protein ID:NP_001007228Link to BLAST:NP_001007228.1
Original member Current member NCBI NM_001007228.2 NP_001007229.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007228.2Link to Protein Sequence:NP_001007229.1Re-query CCDS DB by Nucleotide ID:NM_001007228Re-query CCDS DB by Protein ID:NP_001007229Link to BLAST:NP_001007229.1
Original member Current member NCBI NM_001007229.1 NP_001007230.1 Accepted alive Link to Nucleotide Sequence:NM_001007229.1Link to Protein Sequence:NP_001007230.1Re-query CCDS DB by Nucleotide ID:NM_001007229Re-query CCDS DB by Protein ID:NP_001007230Link to BLAST:NP_001007230.1
Original member Current member NCBI NM_001007230.1 NP_001007231.1 Accepted alive Link to Nucleotide Sequence:NM_001007230.1Link to Protein Sequence:NP_001007231.1Re-query CCDS DB by Nucleotide ID:NM_001007230Re-query CCDS DB by Protein ID:NP_001007231Link to BLAST:NP_001007231.1
Original member Current member NCBI NM_001370730.1 NP_001357659.1 Accepted alive Link to Nucleotide Sequence:NM_001370730.1Link to Protein Sequence:NP_001357659.1Re-query CCDS DB by Nucleotide ID:NM_001370730Re-query CCDS DB by Protein ID:NP_001357659Link to BLAST:NP_001357659.1
Original member Current member NCBI NM_001370731.1 NP_001357660.1 Accepted alive Link to Nucleotide Sequence:NM_001370731.1Link to Protein Sequence:NP_001357660.1Re-query CCDS DB by Nucleotide ID:NM_001370731Re-query CCDS DB by Protein ID:NP_001357660Link to BLAST:NP_001357660.1
Original member Current member NCBI NM_001370732.1 NP_001357661.1 Accepted alive Link to Nucleotide Sequence:NM_001370732.1Link to Protein Sequence:NP_001357661.1Re-query CCDS DB by Nucleotide ID:NM_001370732Re-query CCDS DB by Protein ID:NP_001357661Link to BLAST:NP_001357661.1
Original member Current member NCBI NM_003563.3 NP_003554.1 Accepted alive Link to Nucleotide Sequence:NM_003563.3Link to Protein Sequence:NP_003554.1Re-query CCDS DB by Nucleotide ID:NM_003563Re-query CCDS DB by Protein ID:NP_003554Link to BLAST:NP_003554.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007227.1 374 O43791 374 100% 0 0
NP_001007228.1 374 O43791 374 100% 0 0
NP_001007229.1 374 O43791 374 100% 0 0
NP_001007230.1 374 O43791 374 100% 0 0
NP_001007231.1 374 O43791 374 100% 0 0
NP_001357659.1 374 O43791 374 100% 0 0
NP_001357660.1 374 O43791 374 100% 0 0
NP_001357661.1 374 O43791 374 100% 0 0
NP_003554.1 374 O43791 374 100% 0 0

Chromosomal Locations for CCDS 11551.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 49600378 49600522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49601865 49602007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49607250 49607372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49607874 49607929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49611280 49611457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49618981 49619108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49619234 49619385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49621946 49622067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 49622733 49622810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGTCAAGGGTTCCAAGTCCTCCACCTCCGGCAGAAATGTCGAGTGGCCCCGTAGCTGAGAGTTGGTGCT
ACACACAGATCAAGGTAGTGAAATTCTCCTACATGTGGACCATCAATAACTTTAGCTTTTGCCGGGAGGA
AATGGGTGAAGTCATTAAAAGTTCTACATTTTCATCAGGAGCAAATGATAAACTGAAATGGTGTTTGCGA
GTAAACCCCAAAGGGTTAGATGAAGAAAGCAAAGATTACCTGTCACTTTACCTGTTACTGGTCAGCTGTC
CAAAGAGTGAAGTTCGGGCAAAATTCAAATTCTCCATCCTGAATGCCAAGGGAGAAGAAACCAAAGCTAT
GGAGAGTCAACGGGCATATAGGTTTGTGCAAGGCAAAGACTGGGGATTCAAGAAATTCATCCGTAGAGAT
TTTCTTTTGGATGAGGCCAACGGGCTTCTCCCTGATGACAAGCTTACCCTCTTCTGCGAGGTGAGTGTTG
TGCAAGATTCTGTCAACATTTCTGGCCAGAATACCATGAACATGGTAAAGGTTCCTGAGTGCCGGCTGGC
AGATGAGTTAGGAGGACTGTGGGAGAATTCCCGGTTCACAGACTGCTGCTTGTGTGTTGCCGGCCAGGAA
TTCCAGGCTCACAAGGCTATCTTAGCAGCTCGTTCTCCGGTTTTTAGTGCCATGTTTGAACATGAAATGG
AGGAGAGCAAAAAGAATCGAGTTGAAATCAATGATGTGGAGCCTGAAGTTTTTAAGGAAATGATGTGCTT
CATTTACACGGGGAAGGCTCCAAACCTCGACAAAATGGCTGATGATTTGCTGGCAGCTGCTGACAAGTAT
GCCCTGGAGCGCTTAAAGGTCATGTGTGAGGATGCCCTCTGCAGTAACCTGTCCGTGGAGAACGCTGCAG
AAATTCTCATCCTGGCCGACCTCCACAGTGCAGATCAGTTGAAAACTCAGGCAGTGGATTTCATCAACTA
TCATGCTTCGGATGTCTTGGAGACCTCTGGGTGGAAGTCAATGGTGGTGTCACATCCCCACTTGGTGGCT
GAGGCATACCGCTCTCTGGCTTCAGCACAGTGCCCTTTTCTGGGACCCCCACGCAAACGCCTGAAGCAAT
CCTAA

Translation (374 aa):
MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLR
VNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRD
FLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQE
FQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKY
ALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVA
EAYRSLASAQCPFLGPPRKRLKQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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