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Report for CCDS4246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4246.1 Public Homo sapiens 5 PCDHB4 24 110 108 CCDS HistoryNCBI Gene:56131Re-query CCDS DB by CCDS ID:4246.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4246.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000194152.4 ENSP00000194152.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000194152.4Link to Ensembl Protein Viewer:ENSP00000194152.1Re-query CCDS DB by Nucleotide ID:ENST00000194152Re-query CCDS DB by Protein ID:ENSP00000194152
Original member Current member NCBI NM_018938.4 NP_061761.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018938.4Link to Protein Sequence:NP_061761.1Re-query CCDS DB by Nucleotide ID:NM_018938Re-query CCDS DB by Protein ID:NP_061761Link to BLAST:NP_061761.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061761.1 795 Q9Y5E5 795 100% 0 0

Chromosomal Locations for CCDS 4246.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141121999 141124386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGAAGAAGCTAGGGAGAATTCATCCAAACAGGCAAGTGTTGGCCTTTATTTTGATGGTGTTCTTGTCTC
AGGTTCGCCTCGAGCCTATTCGTTATTCTGTGTTGGAGGAAACAGAGAGCGGCTCCTTTGTAGCCCATCT
GGCCAAGGATCTGGGCCTGGGAATTGGGGAACTGGCCTCCCGGTCAGCCCGGGTGCTGTCTGACGATGAC
AAGCAGCGTTTGCAGCTGGATCGTCAGACTGGAGATTTGCTTCTGAGGGAGAAACTAGACCGGGAAGAGC
TCTGTGGTCCTATTGAACCGTGTGTACTGCATTTCCAAGTGTTCCTGGAAATGCCGGTGCAATTTTTTCA
AGGAGAATTATTGATCCAGGACATAAATGATCACTCTCCAATATTCCCTGAAAGGGAAGTGCTCTTGAAA
ATACTAGAAAATAGCCAGCCGGGTACTCTATTTCCGTTGCTAATAGCTGAGGATTTGGATGTGGGCAGCA
ATGGTCTTCAAAAATACACAATCAGCCCCAATTCTCATTTTCACATTCTCACTCGAAATCATAGTGAGGG
CAAGAAATACCCAGATTTGGTGCAGGACAAACCACTGGATCGAGAGGAGCAGCCTGAGTTCAGCTTAACC
CTCGTGGCGCTGGATGGTGGGTCACCACCTAGGTCTGGCACGGTCATGGTTCGAATCCTGATCATGGACA
TCAATGACAATGCTCCTGAGTTTGTGCACACTCCATATGGGGTGCAGGTCCTGGAAAACAGCCCCCTAGA
CTCTCCAATTGTTAGGGTCTTAGCTAGAGATATAGATGCTGGAAACTTCGGGAGTGTTTCTTATGGCTTA
TTCCAAGCATCAGATGAAATTAAACAAACTTTCTCAATAAATGAAGTCACGGGAGAAATACTGTTGAAAA
AAAAATTGGATTTCGAAAAAATTAAATCTTACCATGTAGAAATTGAGGCCACAGATGGAGGAGGCCTTTC
TGGAAAAGGCACTGTAGTCATAGAGGTGGTGGATGTGAATGACAATCCCCCAGAACTTATCATATCTTCA
CTCACCAGCTCCATCCCAGAAAATGCTCCTGAGACGGTAGTCTCTATCTTCCGAATTCGAGATAGAGATT
CCGGAGAAAATGGAAAGATGATTTGCTCTATTCCAGATAATCTACCGTTTATTCTAAAACCAACTTTGAA
GAATTTTTACACCCTGGTAACAGAGAGACCACTGGACCGAGAGACCAGCGCTGAGTACAACATCACCATC
GCCGTCACTGACTTGGGGACACCCAGGCTGAAAACCCAGCAGAACATAACCGTGCAGGTCTCCGACGTCA
ATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGCCCT
GCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCACCTACTCGCTGCTG
CCGCCCCAGGACCCGCACCTGCCCCTCGCCTCCCTGGTCTCCATCAACGCAGACAACGGCCACCTGTTCG
CCCTCAGGTCGCTGGACTACGAGGCCCTGCAGGCGTTCGAGTTCCGCGTGGGCGCCTCAGACCGCGGTTC
TCCGGCTTTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACACCAACGACAACTCGCCCTTCGTG
CTGTACCCGCTGCAGAATGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTACC
TGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCTCAA
GGCCACGGAGCCTGGGCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTGAGC
GAGCGCGACGCAGCCAAGCACAGGCTCGTGGTGCTTGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCA
CCGCCACGCTGCACGTGCTCCTGGTGGATGGCTTCTCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCC
GGCCCAGGCCCAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTC
CTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTCGCT
GCTCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTAAGCGGCACCGGGACCCTGTCCCAGAG
CTACCAGTACGAGGTGTGTCTGACAGGAGACTCTGGGACTGGTGAGTTCAAGTTCCTGAAGCCAATATTT
CCTAATCTCTTGGTTCAGGACACCGGGAGGGAAGTTAAGGAAAACCCCAAGTTCAGAAATAGCTTGGTAT
TCAGTTAA

Translation (795 aa):
MKKLGRIHPNRQVLAFILMVFLSQVRLEPIRYSVLEETESGSFVAHLAKDLGLGIGELASRSARVLSDDD
KQRLQLDRQTGDLLLREKLDREELCGPIEPCVLHFQVFLEMPVQFFQGELLIQDINDHSPIFPEREVLLK
ILENSQPGTLFPLLIAEDLDVGSNGLQKYTISPNSHFHILTRNHSEGKKYPDLVQDKPLDREEQPEFSLT
LVALDGGSPPRSGTVMVRILIMDINDNAPEFVHTPYGVQVLENSPLDSPIVRVLARDIDAGNFGSVSYGL
FQASDEIKQTFSINEVTGEILLKKKLDFEKIKSYHVEIEATDGGGLSGKGTVVIEVVDVNDNPPELIISS
LTSSIPENAPETVVSIFRIRDRDSGENGKMICSIPDNLPFILKPTLKNFYTLVTERPLDRETSAEYNITI
AVTDLGTPRLKTQQNITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLL
PPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFEFRVGASDRGSPALSSEALVRVLVLDTNDNSPFV
LYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLLS
ERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLF
LFSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDSGTGEFKFLKPIF
PNLLVQDTGREVKENPKFRNSLVFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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