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Report for CCDS25814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25814.1 Public Mus musculus 12 Msgn1 23 108 98 CCDS HistoryNCBI Gene:56184Re-query CCDS DB by CCDS ID:25814.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25814.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049877.2 ENSMUSP00000055001.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049877.2Link to Ensembl Protein Viewer:ENSMUSP00000055001.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000049877Re-query CCDS DB by Protein ID:ENSMUSP00000055001
Original member Current member NCBI NM_019544.1 NP_062417.1 Accepted alive Link to Nucleotide Sequence:NM_019544.1Link to Protein Sequence:NP_062417.1Re-query CCDS DB by Nucleotide ID:NM_019544Re-query CCDS DB by Protein ID:NP_062417Link to BLAST:NP_062417.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062417.1 188 Q9JK54 188 100% 0 0

Chromosomal Locations for CCDS 25814.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 11208382 11208948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGGACAACCTGGGTGAGACCTTCCTCAGCCTGGAGGATGGCCTGGACTCTTCTGACACCGCTGGTCTGC
TGGCCTCCTGGGACTGGAAAAGCAGAGCCAGGCCCTTGGAGCTGGTCCAGGAGTCCCCCACTCAAAGCCT
CTCCCCAGCTCCTTCTCTGGAGTCCTACTCTGAGGTCGCACTGCCCTGCGGGCACAGTGGGGCCAGCACA
GGAGGCAGCGATGGCTACGGCAGTCACGAGGCTGCCGGCTTAGTCGAGCTGGATTACAGCATGTTGGCTT
TTCAACCTCCCTATCTACACACTGCTGGTGGCCTCAAAGGCCAGAAAGGCAGCAAAGTCAAGATGTCTGT
CCAGCGGAGACGGAAGGCCAGCGAGAGAGAGAAACTCAGGATGCGGACCTTAGCCGATGCCCTCCACACG
CTCCGGAATTACCTGCCGCCTGTCTACAGCCAGAGAGGCCAACCGCTCACCAAGATCCAGACACTCAAGT
ACACCATCAAGTACATCGGGGAACTCACAGACCTCCTCAACAGCAGCGGGAGAGAGCCCAGGCCACAGAG
TGTGTGA

Translation (188 aa):
MDNLGETFLSLEDGLDSSDTAGLLASWDWKSRARPLELVQESPTQSLSPAPSLESYSEVALPCGHSGAST
GGSDGYGSHEAAGLVELDYSMLAFQPPYLHTAGGLKGQKGSKVKMSVQRRRKASEREKLRMRTLADALHT
LRNYLPPVYSQRGQPLTKIQTLKYTIKYIGELTDLLNSSGREPRPQSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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