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Report for CCDS17139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17139.1 Public Mus musculus 2 Rbm38 23 108 98 CCDS HistoryNCBI Gene:56190Re-query CCDS DB by CCDS ID:17139.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029014.15 ENSMUSP00000029014.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029014.15Link to Ensembl Protein Viewer:ENSMUSP00000029014.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029014Re-query CCDS DB by Protein ID:ENSMUSP00000029014
Original member Current member EBI ENSMUST00000173393.7 ENSMUSP00000133816.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173393.7Link to Ensembl Protein Viewer:ENSMUSP00000133816.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173393Re-query CCDS DB by Protein ID:ENSMUSP00000133816
Original member NCBI NM_019547.2 NP_062420.2 Updated not alive Link to Nucleotide Sequence:NM_019547.2Link to Protein Sequence:NP_062420.2Re-query CCDS DB by Nucleotide ID:NM_019547Re-query CCDS DB by Protein ID:NP_062420
Current member NCBI NM_019547.3 NP_062420.2 Accepted alive Link to Nucleotide Sequence:NM_019547.3Link to Protein Sequence:NP_062420.2Re-query CCDS DB by Nucleotide ID:NM_019547Re-query CCDS DB by Protein ID:NP_062420Link to BLAST:NP_062420.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062420.2 237 Q62176 237 100% 0 0

Chromosomal Locations for CCDS 17139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 173022040 173022270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173022792 173022915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173023327 173023381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 173033506 173033809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGCTGCTGCAGCCCGCGTGCTCCCCGAGTGTGTTTCCGCGGCCGTCCGCCGCCCCCAGCGCCATGCACG
GCTCACAGAAGGACACCACGTTCACCAAGATCTTCGTGGGCGGCCTGCCCTACCACACCACCGACGCATC
GCTCAGAAAGTACTTCGAGGGCTTCGGAGACATCGAGGAGGCCGTGGTCATCACCGACCGCCAGACCGGC
AAGTCCCGCGGCTACGGCTTCGTGACCATGGCAGATCGGGCAGCGGCTGATAGGGCTTGCAAAGACCCTA
ACCCTATCATCGATGGTCGCAAGGCCAATGTGAACCTGGCCTACCTGGGTGCCAAGCCTAGGAGCTTACA
GACGGGCTTTGCTGTTGGTGTGCAGCAACTACACCCCACCTTGATCCAGCGCACCTACGGGCTGACTCCT
CACTACATCTACCCACCAGCCATTGTGCAGCCCAGCGTGGTGATCCCTGCCACCCCTGTCCCGTCACTGT
CCTCGCCCTACCTTGAGTATACACCAGCCAGCCCAGCCTACGCCCAGTACCCGCCAGCCACTTACGACCA
GTACCCATATGCTGCCTCACCTGCTGCAGCCACCAGCTTCGTGGGCTACGGCTACCCTGCTGCCGTGCCC
CAAGCCTTGTCTGCTGCTGCACCTGCAGGCACCACCTTCGTGCAGTACCAGGCACCTCAGCTACAGCCTG
ACAGGATGCAGTGA

Translation (237 aa):
MLLQPACSPSVFPRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG
KSRGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTP
HYIYPPAIVQPSVVIPATPVPSLSSPYLEYTPASPAYAQYPPATYDQYPYAASPAAATSFVGYGYPAAVP
QALSAAAPAGTTFVQYQAPQLQPDRMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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