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Report for CCDS38605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38605.1 Public Mus musculus 3 Prmt6 23 108 98 CCDS HistoryNCBI Gene:99890Re-query CCDS DB by CCDS ID:38605.1Re-query CCDS DB by GeneID:99890See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106567.1 ENSMUSP00000102177.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106567.1Link to Ensembl Protein Viewer:ENSMUSP00000102177.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106567Re-query CCDS DB by Protein ID:ENSMUSP00000102177
Original member Current member EBI ENSMUST00000168412.2 ENSMUSP00000129801.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168412.2Link to Ensembl Protein Viewer:ENSMUSP00000129801.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168412Re-query CCDS DB by Protein ID:ENSMUSP00000129801
Original member Current member EBI ENSMUST00000190378.1 ENSMUSP00000140836.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190378.1Link to Ensembl Protein Viewer:ENSMUSP00000140836.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190378Re-query CCDS DB by Protein ID:ENSMUSP00000140836
Original member Current member NCBI NM_178891.5 NP_849222.3 Accepted alive Link to Nucleotide Sequence:NM_178891.5Link to Protein Sequence:NP_849222.3Re-query CCDS DB by Nucleotide ID:NM_178891Re-query CCDS DB by Protein ID:NP_849222Link to BLAST:NP_849222.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_849222.3 378 Q6NZB1 378 100% 0 0

Chromosomal Locations for CCDS 38605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 110249835 110250971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGTCGCTGAGCAAGAAAAGAAAGCTTGAGTCGGGGGACAGCGGAGGCGCCGGCGCCGGAGGGGAGGGAG
CCGAGGAGGAAAATGGCGGGGAGCAGGAGGCGGCCCCGCCACGACCCCGGAGGACCAAGAGCGAGCGGGA
CCAGCTGTACTACGAGTGCTACTCCGACGTCTCGGTCCACGAGGAGATGATCGCCGACCAGGTCCGCACC
GAAGCCTACCGCTTAGGCATCCTGAAGAACTGGGCCGCGCTGCGAGGCAAGACGGTGCTGGACGTGGGCG
CGGGCACCGGCATTCTCAGCATCTTCTGTGCCCAGGCCGGGGCACGGCGCGTGTACGCGGTGGAGGCCAG
CGCCATCTGGCAACAGGCCCGGGAGGTGGTGCGGCTCAACGGGTTGGAGGACCGCGTGCACGTCCTGCCG
GGCCCGGTGGAGACCGTGGAGCTGCCGGAGCGAGTGGACGCCATCGTCAGCGAGTGGATGGGCTACGGAC
TTCTGCACGAGTCCATGCTGAGCTCCGTGCTCCACGCGCGGACCAAATGGCTGAAGGAGGGCGGTCTCCT
CCTGCCAGCTTCCGCGGAGCTCTTCGTGGCCCCGATTAGCGACCAGATGCTCGAGTGGCGTCTGGGTTTC
TGGAGCCAGGTGAAGCAGCACTATGGCGTGGATATGAGCTGCATGGAGAGCTTCGCCACGCGCTGCCTCA
TGGGCCATTCGGAGATCGTGGTGCAGGATCTGTCCGGAGAGGACGTGCTGGCCCGGCCGCAGCGCTTTGC
CCAGCTCGAGCTGGCCCGAGCCGGCCTGGAGCAGGAGCTGGAGGCTGGTGTGGGCGGGCGCTTCCGCTGC
AGCTGCTATGGTTCCGCGCCTCTACATGGTTTCGCCGTCTGGTTTCAAGTGACCTTTCCCGGAGGGGACT
CGGAGAAACCTCTGGTGCTGTCCACCTCGCCTTTTCACCCGGCCACCCACTGGAAGCAGGCGCTCCTCTA
CTTGAACGAGCCGGTGCCGGTGGAACAAGATACGGACATTTCCGGAGAGATCACCCTGCTGCCCTCCCCG
GACAACCCCCGGCGTCTGCGCATACTTCTGCGCTACAAAGTGGGAGACCATGAGGAAAAGACCAAAGACT
TTGCCATGGAGGACTGA

Translation (378 aa):
MSLSKKRKLESGDSGGAGAGGEGAEEENGGEQEAAPPRPRRTKSERDQLYYECYSDVSVHEEMIADQVRT
EAYRLGILKNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRLNGLEDRVHVLP
GPVETVELPERVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFVAPISDQMLEWRLGF
WSQVKQHYGVDMSCMESFATRCLMGHSEIVVQDLSGEDVLARPQRFAQLELARAGLEQELEAGVGGRFRC
SCYGSAPLHGFAVWFQVTFPGGDSEKPLVLSTSPFHPATHWKQALLYLNEPVPVEQDTDISGEITLLPSP
DNPRRLRILLRYKVGDHEEKTKDFAMED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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