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Report for CCDS6765.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6765.3 Public Homo sapiens 9 FSD1L 24 110 108 CCDS HistoryNCBI Gene:83856Re-query CCDS DB by CCDS ID:6765.3Re-query CCDS DB by GeneID:83856See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 6765.2
The coding region has been updated to represent an alternative splice site that is more supported by the available transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6765.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000484973.5 ENSP00000419691.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484973.5Link to Ensembl Protein Viewer:ENSP00000419691.1Re-query CCDS DB by Nucleotide ID:ENST00000484973Re-query CCDS DB by Protein ID:ENSP00000419691
Original member Current member NCBI NM_001287192.2 NP_001274121.1 Accepted alive Link to Nucleotide Sequence:NM_001287192.2Link to Protein Sequence:NP_001274121.1Re-query CCDS DB by Nucleotide ID:NM_001287192Re-query CCDS DB by Protein ID:NP_001274121Link to BLAST:NP_001274121.1

Chromosomal Locations for CCDS 6765.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105448221 105448235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105464236 105464331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105468193 105468324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105471904 105472005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105479354 105479376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105484381 105484502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105506399 105506608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105508617 105508715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105512807 105512936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105534496 105534593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105535067 105535318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105539263 105539351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105546358 105546483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGACTCCCAGAAAGAAGCTCTACAGAGGATCATTTCAACTCTGGCAAATAAAAATGATGAAATTCAGA
ACTTTATTGATACACTACATCATACACTAAAAGGAGTTCAGGAAAATTCGTCCAACATACTCTCAGAGTT
AGATGAAGAATTTGATAGTTTATACTCTATACTGGATGAAGTAAAAGAAAGTATGATTAACTGTATCAAG
CAGGAACAAGCTCGTAAATCCCAAGAGTTACAGAGTCAGATTAGTCAATGTAATAATGCCCTGGAGAACT
CTGAAGAACTATTAGAATTTGCAACAAGGTCATTAGATATAAAGGAACCTGAAGAATTTTCAAAGGCTGC
CAGACAGATCAAGGATAGAGTCACAATGGCTTCAGCCTTTCGCCTTTCTTTGAAACCAAAGGTCAGTGAC
AACATGACTCATTTAATGGTGGATTTCTCACAGGAAAGACAGATGCTGCAAACTTTGAAGTTTTTGCCAG
TCCCCAAAGCTCCAGAGATAGATCCAGTAGAGTGTTTGGTGGCAGATAACTCTGTAACAGTGGCTTGGAG
AATGCCAGAAGAAGATAATAAGATTGACCATTTTATACTGGAACATAGGAAGACTAATTTTGATGGACTT
CCACGTGTAAAGGATGAGCGATGCTGGGAGATAATTGATAATATTAAGGGTACTGAATATACACTATCAG
GCTTAAAATTTGATTCAAAGTATATGAATTTCAGAGTGCGAGCTTGTAACAAGGCTGTGGCTGGAGAGTA
TTCTGATCCAGTGACTCTAGAGACCAAAGCACTTAACTTCAATTTGGATAACTCCTCATCCCATTTGAAC
CTGAAAGTTGAAGATACATGTGTAGAGTGGGATCCTACTGGAGGAAAAGGTCAAGAAAGTAAAATTAAAG
GAAAAGAGAACAAGGGCAGTGGTACACCATCCCCAAAACGAACATCTGTAGGCTCCAGGCCACCAGCAGT
AAGAGGCAGTAGAGATCGTTTTACTGGAGAATCATACACAGTGCTGGGAGACACTGCTATTGAAAGTGGA
CAACATTATTGGGAGGTCAAGGCCCAGAAGGATTGTAAATCCTACAGTGTGGGAGTAGCATACAAAACGT
TGGGGAAATTTGACCAATTGGGAAAGACAAACACTAGTTGGTGTATCCATGTCAACAACTGGCTACAAAA
CACATTTGCAGCAAAGCATAATAATAAAGTCAAAGCTTTGGATGTTACTGTTCCTGAAAAAATAGGTGTA
TTTTGTGATTTTGATGGGGGTCAACTTTCATTCTATGATGCAAATTCTAAACAGTTGCTATATTCCTTTA
AGACAAAATTTACTCAGCCAGTACTACCTGGTTTCATGGTATGGTGTGGTGGACTTTCTTTGAGTACTGG
GATGCAGGTTCCAAGTGCTGTGAGAACACTTCAGAAAAGTGAAAATGGAATGACTGGTTCAGCTAGCAGC
CTGAACAATGTTGTTACTCAATAG

Translation (497 aa):
MDSQKEALQRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKESMINCIK
QEQARKSQELQSQISQCNNALENSEELLEFATRSLDIKEPEEFSKAARQIKDRVTMASAFRLSLKPKVSD
NMTHLMVDFSQERQMLQTLKFLPVPKAPEIDPVECLVADNSVTVAWRMPEEDNKIDHFILEHRKTNFDGL
PRVKDERCWEIIDNIKGTEYTLSGLKFDSKYMNFRVRACNKAVAGEYSDPVTLETKALNFNLDNSSSHLN
LKVEDTCVEWDPTGGKGQESKIKGKENKGSGTPSPKRTSVGSRPPAVRGSRDRFTGESYTVLGDTAIESG
QHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSWCIHVNNWLQNTFAAKHNNKVKALDVTVPEKIGV
FCDFDGGQLSFYDANSKQLLYSFKTKFTQPVLPGFMVWCGGLSLSTGMQVPSAVRTLQKSENGMTGSASS
LNNVVTQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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