NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23233.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23233.1 Public Mus musculus 9 Arid3b 23 108 98 CCDS HistoryNCBI Gene:56380Re-query CCDS DB by CCDS ID:23233.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23233.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004780.15 ENSMUSP00000004780.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004780.15Link to Ensembl Protein Viewer:ENSMUSP00000004780.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000004780Re-query CCDS DB by Protein ID:ENSMUSP00000004780
Original member Current member EBI ENSMUST00000171444.7 ENSMUSP00000130173.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171444.7Link to Ensembl Protein Viewer:ENSMUSP00000130173.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171444Re-query CCDS DB by Protein ID:ENSMUSP00000130173
Original member NCBI NM_019689.2 NP_062663.1 Updated not alive Link to Nucleotide Sequence:NM_019689.2Link to Protein Sequence:NP_062663.1Re-query CCDS DB by Nucleotide ID:NM_019689Re-query CCDS DB by Protein ID:NP_062663
Current member NCBI NM_019689.3 NP_062663.1 Accepted alive Link to Nucleotide Sequence:NM_019689.3Link to Protein Sequence:NP_062663.1Re-query CCDS DB by Nucleotide ID:NM_019689Re-query CCDS DB by Protein ID:NP_062663Link to BLAST:NP_062663.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062663.1 568 Q9Z1N7-1 568 100% 0 0

Chromosomal Locations for CCDS 23233.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57792516 57792685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57794936 57795034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57796107 57796352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57796472 57796788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57798042 57798225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57810165 57810237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57810409 57810480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57833616 57834161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGAGCCTCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCCACAGCAGCCTCTGCTACAGATGG
ATGCCAGAGAGAAGCAGGGACCACAGACGAGAGAATCACAGTTCCTGTATGCCTCAAAACTAGGCACGCA
GCCTGCTCTCCTTTCCATCACACCCGGGAGACCTTCTGGTAGTTCTGTTCTGGGTCCCTTAGCCAGAGTT
CCACCAGCCACACCGGTGGCTCGAATGTCTGAGCAGAGCAACGTGAACTCCGAGCCTGAGGAGGAGGAAG
GAGGCCTGGAAGATGAAGATGGAGATGATGATGTTGCAGAGGTGGCTGAAAAAGAGGCCCAGGCTGCTTC
CAAATATTTCCACATGCAAAAAGTAACTCGCCAAGAACCCAGAGCAACACCCATGTCCAGCCTGCTTCCA
GTACCCGGACTTTCACCACAGGGACAACAAACTAAAGAAGACCATACCAAAGATGCTTCCAAGGCCCCGC
CCTCTGTGCCCACAGCTGGACAGCCGAGCTGGAGTCTGGATGAGCAGCTTAAGCAGAATGGTGCTTTGGC
CTGGAGTGACGATGCTGATGGAGGCAGGGGAAGAGAGATCTCTCGAGATTTTGCCAAGCTGTATGAACTA
GACGGTGATCCTGAAAGGAAAGAATTTCTGGATGACCTCTTCATCTTCATGCAGAAGAGAGGCACCCCAA
TCAACCGGATTCCCATCATGGCCAAGCAGATCCTGGACCTGTACATGCTGTATAAACTGGTCACAGAGAA
AGGAGGCCTGGTGGAGATCATCAACAAGAAAATCTGGAGGGAGATCACCAAAGGCCTGAACCTGCCCACC
TCCATCACCAGCGCTGCCTTCACCCTCAGGACTCAGTACATGAAGTATCTATATGCCTATGAGTGTGAGA
AGAAAGCCTTGAGCTCCCCAGCTGAACTACAGGCAGCCATCGATGGCAACCGTAGGGAAGGTCGGAGGCC
CAGCTACAGCTCCTCGCTCTTTGGCTATTCTCCTGCTGCCGCCGCTGCTGCTGCTGCTGCCGCCGCCGCC
GCTGCTGCTAGTGCTGCCTCTGCTGGGACCCCCGCCCTTCTCTCGTCCCCCAAGATCCGCTTCTCCATCC
TTGGGCTTGGCTCCAGCAGTGGCACCAGTGCCAGCAGCCCTCGGATACCCCCGGCATCTACTCTCAGGAA
AGGTGATGGAGTCCCAGTGCCTGTGCCAAATCGCCTGGCTGTGTCAGGGACTTTGGCAGGCCAGCAGGCT
GGCAACCGGCCTGGCCCACTGGAGCACCTAAGGGAGCGCCTGGAATCAGGGGAGCCCCCTGAGAAGAAGG
CATCAAGGTTGTCAGAGGAGGAGCAACGCCTGGTGCAGCAGGCCTTCCAGCGCAACCTCTTCAGCATGGC
GCGACAGCTCCCCATGAAGATCAGAATCAACGGCAGGGAAGACAGAGCAGAGCCTTCAGCTCCAGCACTG
AACCTGACCACAAGCAACATTGGGAGCATCAATATGTCTGTGGATATTGATGGTACCACCTATACAGGTG
TGCTGTTTGCCCAGAAACCAGTGGTCCACCTCATTGCGGGCTCTACTCCCCAGAGCATTGGCAGCAGCGC
CAGCAGCAGCAACAGCAGCAGCTCTCACTGCTCACCAAGTCCTACCTCATCCCGGGGTACCCCCAGTGCA
GAGCCCTCCACCAGCTGGTCCCTCTGA

Translation (568 aa):
MEPLQQQQQQQQQKQPQQPLLQMDAREKQGPQTRESQFLYASKLGTQPALLSITPGRPSGSSVLGPLARV
PPATPVARMSEQSNVNSEPEEEEGGLEDEDGDDDVAEVAEKEAQAASKYFHMQKVTRQEPRATPMSSLLP
VPGLSPQGQQTKEDHTKDASKAPPSVPTAGQPSWSLDEQLKQNGALAWSDDADGGRGREISRDFAKLYEL
DGDPERKEFLDDLFIFMQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPT
SITSAAFTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAAAAAAAAAAA
AAASAASAGTPALLSSPKIRFSILGLGSSSGTSASSPRIPPASTLRKGDGVPVPVPNRLAVSGTLAGQQA
GNRPGPLEHLRERLESGEPPEKKASRLSEEEQRLVQQAFQRNLFSMARQLPMKIRINGREDRAEPSAPAL
NLTTSNIGSINMSVDIDGTTYTGVLFAQKPVVHLIAGSTPQSIGSSASSSNSSSSHCSPSPTSSRGTPSA
EPSTSWSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH