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Report for CCDS23810.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23810.1 Public Mus musculus 10 Foxo3 23 108 98 CCDS HistoryNCBI Gene:56484Re-query CCDS DB by CCDS ID:23810.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23810.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056974.3 ENSMUSP00000050683.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056974.3Link to Ensembl Protein Viewer:ENSMUSP00000050683.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056974Re-query CCDS DB by Protein ID:ENSMUSP00000050683
Original member Current member EBI ENSMUST00000105502.7 ENSMUSP00000101141.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105502.7Link to Ensembl Protein Viewer:ENSMUSP00000101141.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105502Re-query CCDS DB by Protein ID:ENSMUSP00000101141
Original member Current member EBI ENSMUST00000175881.7 ENSMUSP00000135380.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000175881.7Link to Ensembl Protein Viewer:ENSMUSP00000135380.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000175881Re-query CCDS DB by Protein ID:ENSMUSP00000135380
Original member NCBI NM_019740.2 NP_062714.1 Updated not alive Link to Nucleotide Sequence:NM_019740.2Link to Protein Sequence:NP_062714.1Re-query CCDS DB by Nucleotide ID:NM_019740Re-query CCDS DB by Protein ID:NP_062714
Current member NCBI NM_019740.3 NP_062714.1 Accepted alive Link to Nucleotide Sequence:NM_019740.3Link to Protein Sequence:NP_062714.1Re-query CCDS DB by Nucleotide ID:NM_019740Re-query CCDS DB by Protein ID:NP_062714Link to BLAST:NP_062714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062714.1 672 Q9WVH4 672 100% 0 0

Chromosomal Locations for CCDS 23810.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 42196501 42197901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 42274816 42275433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGCAGAGGCACCAGCCTCCCCGGTCCCGCTCTCTCCGCTCGAAGTGGAGCTGGACCCAGAGTTCGAGC
CACAGAGTCGGCCACGCTCCTGTACGTGGCCCCTGCAGAGGCCGGAGCTGCAGGCGAGCCCGGCCAAGCC
CTCGGGGGAGACGGCCGCAGACTCCATGATCCCCGAGGAGGACGACGATGAAGACGACGAGGACGGCGGC
GGCCGAGCCAGCTCGGCCATGGTGATCGGTGGCGGCGTGAGCAGCACGCTGGGTTCCGGGCTGCTCCTCG
AGGATTCGGCCATGCTGCTGGCTCCAGGAGGGCAGGACCTCGGGTCGGGGCCAGCGTCCGCCGCAGGCGC
TCTGAGTGGGGGCACGCCGACGCAGCTGCAGCCTCAGCAGCCACTGCCACAGCCGCAGCCGGGGGCGGCT
GGGGGCTCTGGGCAACCAAGGAAATGCTCCTCGCGGCGGAATGCCTGGGGGAACCTGTCCTATGCCGACC
TGATCACCCGCGCCATCGAGAGCTCCCCGGACAAACGGCTCACTTTGTCCCAGATCTACGAGTGGATGGT
GCGCTGTGTGCCCTACTTCAAGGATAAGGGCGACAGCAACAGCTCTGCGGGCTGGAAGAACTCCATCCGG
CACAACCTGTCCCTGCACAGCCGCTTCATGCGCGTTCAGAATGAAGGCACGGGCAAGAGCTCTTGGTGGA
TCATCAACCCCGATGGGGGAAAGAGCGGGAAGGCCCCCCGGCGGCGTGCGGTCTCCATGGACAACAGCAA
CAAGTACACCAAGAGCCGAGGCCGGGCAGCCAAGAAGAAGGCGGCCCTGCAGGCTGCCCCAGAGTCGGCA
GACGACAGTCCTTCCCAGCTCTCCAAGTGGCCTGGCAGCCCCACGTCCCGCAGCAGCGACGAGCTGGATG
CGTGGACCGACTTCCGCTCGCGCACCAATTCCAACGCCAGCACCGTGAGCGGCCGCCTGTCGCCCATCCT
GGCAAGCACGGAGCTGGATGACGTCCAGGATGATGATGGACCCCTGTCCCCCATGCTGTACAGCAGCTCT
GCCAGCCTGTCGCCCTCCGTGAGCAAGCCGTGTACTGTGGAGCTTCCGCGGCTGACGGACATGGCCGGCA
CCATGAATCTGAATGATGGGCTGGCCGAGAACCTCATGGACGACCTGCTGGATAACATCGCGCTCCCGCC
ATCGCAGCCATCGCCTCCTGGCGGGCTTATGCAGCGGGGCTCCAGCTTCCCATATACCGCCAAGAGCTCC
GGCCTGGGCTCCCCAACCGGCTCCTTCAACAGTACCGTGTTTGGACCTTCGTCTCTGAACTCCTTGCGTC
AGTCACCCATGCAGACTATCCAGGAGAACAGACCAGCCACCTTCTCTTCCGTGTCACACTACGGCAACCA
GACACTCCAAGACCTGCTTGCTTCAGACTCACTCAGCCACAGCGACGTCATGATGACCCAGTCGGACCCC
TTGATGTCTCAGGCTAGCACCGCCGTGTCCGCCCAGAATGCCCGCCGGAACGTGATGCTTCGCAACGATC
CAATGATGTCCTTTGCTGCCCAGCCTACCCAGGGGAGTTTGGTCAATCAGAACTTGCTCCACCACCAGCA
CCAAACCCAGGGCGCTCTTGGTGGCAGCCGTGCCTTGTCAAATTCTGTCAGCAACATGGGCTTGAGTGAC
TCCAGCAGCCTTGGCTCAGCCAAACACCAGCAGCAGTCTCCCGCCAGCCAGTCTATGCAAACCCTCTCGG
ACTCTCTCTCAGGCTCCTCACTGTATTCAGCTAGTGCAAACCTTCCCGTCATGGGCCACGATAAGTTCCC
CAGTGACTTGGACCTGGACATGTTCAATGGGAGCTTGGAATGTGACATGGAGTCCATCATCCGTAGTGAA
CTCATGGATGCTGACGGGTTGGATTTTAACTTTGACTCCCTCATCTCCACACAGAACGTTGTTGGTTTGA
ATGTGGGGAACTTCACTGGTGCTAAGCAGGCCTCATCTCAAAGCTGGGTACCAGGCTGA

Translation (672 aa):
MAEAPASPVPLSPLEVELDPEFEPQSRPRSCTWPLQRPELQASPAKPSGETAADSMIPEEDDDEDDEDGG
GRASSAMVIGGGVSSTLGSGLLLEDSAMLLAPGGQDLGSGPASAAGALSGGTPTQLQPQQPLPQPQPGAA
GGSGQPRKCSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIR
HNLSLHSRFMRVQNEGTGKSSWWIINPDGGKSGKAPRRRAVSMDNSNKYTKSRGRAAKKKAALQAAPESA
DDSPSQLSKWPGSPTSRSSDELDAWTDFRSRTNSNASTVSGRLSPILASTELDDVQDDDGPLSPMLYSSS
ASLSPSVSKPCTVELPRLTDMAGTMNLNDGLAENLMDDLLDNIALPPSQPSPPGGLMQRGSSFPYTAKSS
GLGSPTGSFNSTVFGPSSLNSLRQSPMQTIQENRPATFSSVSHYGNQTLQDLLASDSLSHSDVMMTQSDP
LMSQASTAVSAQNARRNVMLRNDPMMSFAAQPTQGSLVNQNLLHHQHQTQGALGGSRALSNSVSNMGLSD
SSSLGSAKHQQQSPASQSMQTLSDSLSGSSLYSASANLPVMGHDKFPSDLDLDMFNGSLECDMESIIRSE
LMDADGLDFNFDSLISTQNVVGLNVGNFTGAKQASSQSWVPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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