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Report for CCDS40642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40642.1 Public Mus musculus 9 Cib2 23 108 98 CCDS HistoryNCBI Gene:56506Re-query CCDS DB by CCDS ID:40642.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041901.6 ENSMUSP00000038527.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041901.6Link to Ensembl Protein Viewer:ENSMUSP00000038527.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041901Re-query CCDS DB by Protein ID:ENSMUSP00000038527
Original member Current member NCBI NM_019686.6 NP_062660.1 Accepted alive Link to Nucleotide Sequence:NM_019686.6Link to Protein Sequence:NP_062660.1Re-query CCDS DB by Nucleotide ID:NM_019686Re-query CCDS DB by Protein ID:NP_062660Link to BLAST:NP_062660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062660.1 187 Q9Z309 187 100% 0 0

Chromosomal Locations for CCDS 40642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 54545463 54545484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54545889 54546084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54548333 54548480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54549781 54549892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54554487 54554521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 54559968 54560018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGGGGAACAAGCAGACCATCTTCACTGAAGAGCAGCTGGACAACTACCAGGACTGCACTTTCTTCAATA
AGAAGGACATCCTCAAGCTTCATGCACGGTTCTATGAGCTGGCTCCCAACCTCGTCCCGATGGACTACAG
GAAGAGTCCCATCGTCCATGTACCCATGAGCCTCATCATTCAGATGCCGGAGCTCCGGGAGAATCCCTTC
AAAGAGAGGATTGTGGAGGCTTTCTCCGAGGATGGCGAGGGGAACCTCACCTTCAATGACTTTGTGGACA
TGTTCTCTGTGCTCTGCGAATCAGCGCCTCGGGAGCTCAAGGCAAACTATGCCTTCAAGATCTATGACTT
CAACACTGACAATTTCATCTGTAAAGAAGACTTAGAGATGACGCTGGCCCGACTCACCAAGTCTGAGTTG
GAAGAGGATGAGGTAGTGCTTGTGTGTGACAAAGTCATTGAAGAGGCTGACCTGGATGGTGACGGCAAGC
TGGGCTTTGCTGACTTTGAGGACATGATCGCCAAGGCCCCTGATTTTCTCAGCACCTTCCACATTCGAAT
CTGA

Translation (187 aa):
MGNKQTIFTEEQLDNYQDCTFFNKKDILKLHARFYELAPNLVPMDYRKSPIVHVPMSLIIQMPELRENPF
KERIVEAFSEDGEGNLTFNDFVDMFSVLCESAPRELKANYAFKIYDFNTDNFICKEDLEMTLARLTKSEL
EEDEVVLVCDKVIEEADLDGDGKLGFADFEDMIAKAPDFLSTFHIRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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