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Report for CCDS53822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53822.1 Public Homo sapiens 12 EID3 24 110 108 CCDS HistoryNCBI Gene:493861Re-query CCDS DB by CCDS ID:53822.1Re-query CCDS DB by GeneID:493861See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53822.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527879.2 ENSP00000435619.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000527879.2Link to Ensembl Protein Viewer:ENSP00000435619.1Re-query CCDS DB by Nucleotide ID:ENST00000527879Re-query CCDS DB by Protein ID:ENSP00000435619
Original member Current member NCBI NM_001008394.3 NP_001008395.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008394.3Link to Protein Sequence:NP_001008395.1Re-query CCDS DB by Nucleotide ID:NM_001008394Re-query CCDS DB by Protein ID:NP_001008395Link to BLAST:NP_001008395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008395.1 333 Q8N140 333 100% 0 0

Chromosomal Locations for CCDS 53822.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 104303935 104304936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGAAGATGGATGTGTCAGTGAGGGCCGCGGGCTGCTCCGACGACCTCAGCTCTGGGGAGGCCGACGTAG
ACCCAAAGCTCCTGGAGCTCACCGCTGACGAGGAGAAGTGCCGCAGCATCCGCAGGCAGTACCGGCAGCT
CATGTACTGCGTGCGGCAGAACCGGGAGGACATCGTGAGCTCGGCGAACAACTCCTTAACCGAGGCTCTG
GAGGAAGCCAACGTCCTCTTTGATGGCGTGAGCCGAACCAGAGAAGCAGCCCTCGACGCCCGGTTTCTTG
TTATGGCTTCTGATTTGGGTAAAGAAAAGGCAAAGCAGTTAAACTCAGATATGAACTTCTTTAATCAGTT
AGCATTTTGTGACTTTCTGTTTCTGTTCGTGGGTCTGAATTGGATGGAAGGCGATCCTGACAAGTTGAGT
GATTGTGATGATAGCATAGCTCTTTCCTTCTGGAAGGCAATAGAAAAGGAAGCAACATCCTGGATGGTAA
AAGCTGAGACATTCCATTTTGTTTTTGGTTCATTCAAGCTAGAACGTTCTGCACCAAAGCCCCGACTTGA
ACACCAGAAAAAAGTTCGCAAGATGGAAGAAAATGGCAACATGCCTACAAAGTTGCAGAAGTTGGACCTG
AGTAGTTATCCAGAAGCGACAGAAAAAAACGTAGAAAGGATTTTGGGATTGTTGCAAACCTACTTTCGAA
AGTATCCTGATACTCCTGTGTCCTATTTTGAGTTTGTGATTGATCCAAACTCTTTTTCTCGTACTGTGGA
GAATATATTTTATGTTTCTTTTATTGTAAGAGATGGTTTTGCAAGAATAAGGCTTGATGAAGACAGGCTG
CCAATATTAGAGCCGATGAATGTTAACCAAATGGGTGAGGGAAATGATTCCAGTTGCCATGGCAGGAAAC
AGGGAGTTATATCTTTGACTTTACAGGAGTGGAAAAACATTGTGGCAGCTTTTGAAATTTCTGAGGCTAT
GATTACATACTCCTCATACTAA

Translation (333 aa):
MKMDVSVRAAGCSDDLSSGEADVDPKLLELTADEEKCRSIRRQYRQLMYCVRQNREDIVSSANNSLTEAL
EEANVLFDGVSRTREAALDARFLVMASDLGKEKAKQLNSDMNFFNQLAFCDFLFLFVGLNWMEGDPDKLS
DCDDSIALSFWKAIEKEATSWMVKAETFHFVFGSFKLERSAPKPRLEHQKKVRKMEENGNMPTKLQKLDL
SSYPEATEKNVERILGLLQTYFRKYPDTPVSYFEFVIDPNSFSRTVENIFYVSFIVRDGFARIRLDEDRL
PILEPMNVNQMGEGNDSSCHGRKQGVISLTLQEWKNIVAAFEISEAMITYSSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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