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Report for CCDS17904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17904.1 Public Mus musculus 3 Dnase2b 23 108 98 CCDS HistoryNCBI Gene:56629Re-query CCDS DB by CCDS ID:17904.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029836.8 ENSMUSP00000029836.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029836.8Link to Ensembl Protein Viewer:ENSMUSP00000029836.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029836Re-query CCDS DB by Protein ID:ENSMUSP00000029836
Original member Current member EBI ENSMUST00000200633.1 ENSMUSP00000142872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200633.1Link to Ensembl Protein Viewer:ENSMUSP00000142872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200633Re-query CCDS DB by Protein ID:ENSMUSP00000142872
Original member NCBI NM_019957.4 NP_064341.3 Updated not alive Link to Nucleotide Sequence:NM_019957.4Link to Protein Sequence:NP_064341.3Re-query CCDS DB by Nucleotide ID:NM_019957Re-query CCDS DB by Protein ID:NP_064341
Current member NCBI NM_019957.5 NP_064341.3 Accepted alive Link to Nucleotide Sequence:NM_019957.5Link to Protein Sequence:NP_064341.3Re-query CCDS DB by Nucleotide ID:NM_019957Re-query CCDS DB by Protein ID:NP_064341Link to BLAST:NP_064341.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064341.3 354 Q9QY48 354 100% 0 0

Chromosomal Locations for CCDS 17904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 146582274 146582614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146584491 146584688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146586891 146587046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146589068 146589146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146593406 146593583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146596288 146596400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGACAGCAAAGCCTCTAAGAACAGTTCTTTCTTTGCTCTTCTTTGCCCTCTCTGGGGTCCTGGGGACAC
CAGAAATCTCATGCAGAAATGAATATGGTGAAGCTGTGGACTGGTTTATCTTTTATAAGTTACCCAAAAG
GACTAGCAAGGCAAGTGAAGAGGCGGGGCTGCAGTACCTGTACCTGGACTCCACAAGACAAACCTGGAAC
AAGAGCCTCTACCTGATTAACAGCACCAGGAGTGCTCTGGGGAGGACCTTACAGCATCTGTATGACACAC
ATAATTCCACGAATGACACAGCCTATCTAATATACAACGATGGTGTCCCTGGATCTGTGAATTACAGCAG
ACAGTATGGACATGCCAAAGGTCTGCTGGTATGGAACAGAACGCAGGGGTTCTGGCTGATACACTCTGTT
CCCAAGTTTCCCCCAGTTCATGGCTATGAGTACCCAACCTCGGGGAGGCGATATGGACAAACCGGCATCT
GCATCACTTTCGGATACAGCCAGTTTGAGGAAATAGATTTTCAGCTCTTGGTCTTACAACCAAACATCTA
CAGCTGCTTCATTCCAAGCACCTTTCACTGGAAACTTATCTACATGCCCCGGATGTGTGCCAACTCCAGT
TCCTTAAAGATCCCTGTCCGGTACCTCGCTGAACTGCACTCAGCCCAGGGTCTAAACTTCGTCCATTTTG
CAAAATCAAGTTTTTATACTGATGACATCTTTACAGGATGGATAGCTCAAAAGTTGAAGACACATTTGTT
AGCACAAACCTGGCAGAAAAAGAAACAAGAGCTTCCTTCAAACTGTTCCCTGCCTTACCATGTCTACAAC
ATCAAGTCCATTGGGGTAACTTCCAAGTCTTACTTCAGTTCTCGCCAAGACCATTCCAAATGGTGTGTTT
CCATAAAGGGCTCCGCAAATCGCTGGACCTGCATTGGAGACCTAAATCGAAGCCTACACCAAGCCTTAAG
AGGTGGAGGATTCATCTGTACAAAGAATCACTACATTTACCAGGCATTTCATAAATTATATCTCCGTTAT
GGGTTCTGTAAGTAA

Translation (354 aa):
MTAKPLRTVLSLLFFALSGVLGTPEISCRNEYGEAVDWFIFYKLPKRTSKASEEAGLQYLYLDSTRQTWN
KSLYLINSTRSALGRTLQHLYDTHNSTNDTAYLIYNDGVPGSVNYSRQYGHAKGLLVWNRTQGFWLIHSV
PKFPPVHGYEYPTSGRRYGQTGICITFGYSQFEEIDFQLLVLQPNIYSCFIPSTFHWKLIYMPRMCANSS
SLKIPVRYLAELHSAQGLNFVHFAKSSFYTDDIFTGWIAQKLKTHLLAQTWQKKKQELPSNCSLPYHVYN
IKSIGVTSKSYFSSRQDHSKWCVSIKGSANRWTCIGDLNRSLHQALRGGGFICTKNHYIYQAFHKLYLRY
GFCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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