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Report for CCDS25604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25604.1 Public Mus musculus 11 Cdc42ep4 23 108 98 CCDS HistoryNCBI Gene:56699Re-query CCDS DB by CCDS ID:25604.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25604.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053536.4 ENSMUSP00000060227.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053536.4Link to Ensembl Protein Viewer:ENSMUSP00000060227.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000053536Re-query CCDS DB by Protein ID:ENSMUSP00000060227
Original member Current member EBI ENSMUST00000106616.1 ENSMUSP00000102227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106616.1Link to Ensembl Protein Viewer:ENSMUSP00000102227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106616Re-query CCDS DB by Protein ID:ENSMUSP00000102227
Original member Current member NCBI NM_001163346.1 NP_001156818.1 Accepted alive Link to Nucleotide Sequence:NM_001163346.1Link to Protein Sequence:NP_001156818.1Re-query CCDS DB by Nucleotide ID:NM_001163346Re-query CCDS DB by Protein ID:NP_001156818Link to BLAST:NP_001156818.1
Original member Current member NCBI NM_020006.2 NP_064390.1 Accepted alive Link to Nucleotide Sequence:NM_020006.2Link to Protein Sequence:NP_064390.1Re-query CCDS DB by Nucleotide ID:NM_020006Re-query CCDS DB by Protein ID:NP_064390Link to BLAST:NP_064390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156818.1 349 Q9JM96 349 100% 0 0
NP_064390.1 349 Q9JM96 349 100% 0 0

Chromosomal Locations for CCDS 25604.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 113728514 113729563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGCCCATTCTCAAACAGCTGGTGTCCAGCTCTGTGAACTCGAAGCGCCGCTCACGTGCGGACCTCACAG
CCGAGATGATCAGTGCCCCGCTGGGTGACTTCCGCCACACCATGCATGTGGGCCGGGCTGGGGACGCCTT
TGGGGACACGTCTTTCCTCACTAGCAAGGCCAGGGAGGCAGACGACGAGTCCCTGGATGAACAGGCCTCG
GCTTCCAAGCTCAGCCTCCTGTCCAGGAAGTTCCGGGGCAGCAAGCGTTCACAGTCCGTGACCAGAGGGG
ACCGGGAGCAGAGAGACATGCTGGGCTCCCTGCGGGACTCAGCACTGTTTGTCAAGAATGCCATGTCCCT
GCCTCAGCTCAATGAGAAGGAAGCCGCGGAGAAGGACTCGAGCAAGCTGCCCAAGAGCCTGTCGTCCAGC
CCTGTGAAGAAGGCAGACGCTAGAGATGGTGGCCCGAAGAGTCCCCATCGGAACGGGGCCACAGGCCCCC
ACTCACCTGACCCACTCCTTGACGAGCAGGCCTTTGGGGACCTGATGGATCTGCCCATCATGCCCAAAGT
CAGCTACGGGCTGAAGCATGCAGAGTCGATCCTGTCCTTCCACATCGACCTGGGGCCTTCCATGCTGGGA
GATGTTCTCAGCATCATGGACAAGGACCAGTGGGGCTCAGAGGAGGAGGAGGAAGCTGGCGGGTACCGTG
ACAAGGAAGGCCCCAGCAGCATTGTCCAGGCGCCCCCTGTGCTGGAGGTGGTTCCTCCTCTAGGGAGACA
GGAAAGCAAGGCCAGCTGGGACCAGGCCTCTATGCTGCCCCCCCACGCTGTGGAGGATGACGGATGGGCG
GTGGTAGCCCCCAGCCCCAGCTCAGCACGCAGTGTGGGCAGCCACACCACTCGGGACAGCAGCTCCCTGT
CCAGCTACACCTCAGGCGTCCTTGAGGAGCGCAGCCCAGCTTTCAGAGGCCCAGACAGGGTGGCGGCTGC
TCCCCCAAGGCAGCCAGACAAGGAATTCTGCTTCATGGATGAGGAGGAGGAAGATGAGATCCGAGTTTGA

Translation (349 aa):
MPILKQLVSSSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLTSKAREADDESLDEQAS
ASKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKDSSKLPKSLSSS
PVKKADARDGGPKSPHRNGATGPHSPDPLLDEQAFGDLMDLPIMPKVSYGLKHAESILSFHIDLGPSMLG
DVLSIMDKDQWGSEEEEEAGGYRDKEGPSSIVQAPPVLEVVPPLGRQESKASWDQASMLPPHAVEDDGWA
VVAPSPSSARSVGSHTTRDSSSLSSYTSGVLEERSPAFRGPDRVAAAPPRQPDKEFCFMDEEEEDEIRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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