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Report for CCDS27328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27328.1 Public Mus musculus 14 Slitrk5 23 108 98 CCDS HistoryNCBI Gene:75409Re-query CCDS DB by CCDS ID:27328.1Re-query CCDS DB by GeneID:75409See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042767.8 ENSMUSP00000041499.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042767.8Link to Ensembl Protein Viewer:ENSMUSP00000041499.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000042767Re-query CCDS DB by Protein ID:ENSMUSP00000041499
Original member Current member NCBI NM_198865.1 NP_942565.1 Accepted alive Link to Nucleotide Sequence:NM_198865.1Link to Protein Sequence:NP_942565.1Re-query CCDS DB by Nucleotide ID:NM_198865Re-query CCDS DB by Protein ID:NP_942565Link to BLAST:NP_942565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942565.1 957 Q810B7-1 957 100% 0 0

Chromosomal Locations for CCDS 27328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 111678946 111681819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2874 nt):
ATGCACGTTTGCTGCCCCCCAGTAACTTTGGAACAGGACCTTCACAGAAAAATGCATAGCTGGATGCTGC
AGACTCTAGCATTTGCTGTAACATCTCTCGTCCTTTCCTGTGCAGAAACCATCGATTATTATGGGGAAAT
CTGTGACAATGCATGTCCTTGTGAGGAAAAGGACGGCATTTTAACTGTGAGCTGTGAAAACCGGGGCATC
ATCAGTCTCTCTGAAATTAGCCCTCCCCGTTTCCCAATCTATCACCTCTTGTTGTCTGGAAACCTTCTGA
GCCGCCTCTATCCCAATGAGTTTGTTAATTACACAGGGGCTTCAATTTTACATCTGGGTAGCAATGTTAT
CCAAGACATTGAGACTGGGGCTTTTCATGGGCTGAGGGGTTTGAGGCGACTCCATCTAAACAATAATAAA
TTGGAACTTCTGCGAGATGATACCTTTCTTGGCTTGGAGAACTTAGAATACCTGCAGGTCGATTACAATT
ACATCAGTGTCATTGAACCCAATGCTTTTGGGAAACTGCACATGCTGCAGGTGCTTATCCTCAATGACAA
TCTCTTGTCAGGTTTACCCAACAATCTTTTCCGTTTTGTGCCCTTAACGCACTTGGACTTGAGGGGGAAC
AGGCTGAAACTTCTGCCCTATGTGGGGCTGTTGCAACACATGGATAAAGTTGTGGAATTACAGCTGGAGG
AAAACCCCTGGAATTGCTCCTGTGAACTAATTTCTCTCAAGGATTGGTTGGACAGCATCTCCTACTCAGC
CCTTGTGGGCGATGTGGTCTGTGAGACCCCCTTCCGTCTACACGGCAGGGATTTGGACGAGGTATCCAAG
CAGGAACTTTGTCCAAGGAAACTCATTTCTGACTACGAGATGAGGCCACAGACTCCTTTAAGCACCACGG
GGTATCTACATACCACCCCAGCTTCTGTAAACTCTGTGGCCACTTCTTCCTCTGCTGTTTACAAACCCCC
CTTGAAGCCTCCTAAGGGGACCCGCCAGCCCAACAAACCCAGAGTGCGCCCCACTTCTAGGCAGCCCTCT
AAAGACTTGGGCTACAGTAACTATGGCCCCAGCATAGCCTACCAGACCAAATCCCCGGTGCCTTTGGAAT
GTCCTACAGCATGTACTTGCAACCTGCAGATCTCTGATCTGGGTCTCAATGTCAACTGCCAAGAGCGCAA
GATCGAGAGCATCGCGGAGCTGCAGCCCAAGCCCTACAATCCCAAGAAAATGTACCTGACAGAGAACTAT
ATCACTGTTGTGCGCAGAACAGACTTCCTGGAAGCCACCGGTCTAGACCTCCTGCACCTGGGTAATAACC
GCATCTCCATGATCCAGGACCGGGCCTTTGGGGATCTAGGCAACCTGAGACGCCTCTATCTGAATGGCAA
CAGGATTGAGAGGCTGAGCCCAGAATTATTCTATGGCCTGCAGAGCCTGCAGTATCTCTTCCTCCAGTAC
AATCTCATCCGTGAGATCCAGGCTGGGACTTTTGATCCCGTCCCAAACCTCCAGCTGCTATTCTTGAATA
ACAACCAACTGCAGGCCATGCCTTCCGGTGTCTTCTCTGGCCTGACACTTCTCAGGCTGAACCTGAGGGG
TAACAGCTTCACTTCCTTGCCAGTGAGTGGAGTTTTGGATCAGCTGACTTCCCTCATTCAAATAGATCTA
CATGACAACCCTTGGGATTGTACCTGCGACGTGGTGGGCATGAAGCTGTGGATTGAGCAGCTCAAAGTGG
GGGTGTTAGTGGACGAAGTGATCTGTAAGGCGCCCAAGAAATTCGCAGAGACCTACATGCGGTCCATCAA
GTCTGAACTGCTATGCCCAGACTACTCTGATGTGGTGGTTTCCACGCCCACGCCCTCTTCCATCCAGGTA
CCATCCAGGACGAACGCAGCGACTCCAGCTGTGAGGTTGAATAGCACTGGGACCCCCGCAGGCTTAGGAG
CTGGGACGGGGGCATCCTCTGTGCCCTTATCCGTGTTGATCCTCAGTCTGCTGCTGGTTTTCATCATGTC
CGTCTTTGTGGCAGCAGGCCTTTTCGTGCTGGTCATGAAACGGAGGAAAAAGAACCAGAGCGACCACACC
AGTACCAACAATTCCGACGTGAGCTCTTTCAACATGCAGTACAGCGTGTATGGGGGTGGAGGCGGCGGCG
GGGGTGGCCACCCACACGCACACGTGCACCATCGCGGGCCTGCGCTGCCCAAGGTGAAGACTCCCGCGGG
CCACGTGTATGAATACATCCCTCACCCCCTGGGCCACATGTGCAAGAACCCCATCTACCGGTCTCGAGAA
GGCAATTCCGTGGAGGATTACAAAGACCTGCACGAGCTCAAGGTCACTTACAGCAGCAACCACCACCTGC
AGCAGCAGCCGCCGCCGCCGCCGCAACAGCCCCAGCAGCAGCCCCCTCCGCAGATGCAGATGCAGCCTGG
GGAGGAGGAGAGGCGGGAAAGCCACCATTTGAGGAGCCCCGCCTACAGCGTCAGCACCATCGAGCCCCGA
GAGGACCTACTGTCGCCGGTGCAGGACGCTGATCGCTTTTACAGGGGCATTTTAGAGCCAGACAAACACT
GCTCCACTACCCCTGCGGGCAGCAGCCTCCCAGAATACCCTAAATTCCCATGCAGCCCGGCTGCTTACAC
TTTCTCCCCAAACTATGACCTGCGACGCCCCCATCAGTATTTGCACCCGGGTGCAGGGGAGAGCAGGCTG
CGGGAACCGGTGCTCTACAGCCCTCCGGGTGCTGTCTTTGTAGAACCGAACCGGAACGAGTACCTGGAGT
TAAAAGCAAAACTCAATGTTGAGCCGGACTACCTCGAAGTGCTGGAAAAACAGACCACATTTAGTCAGTT
CTAA

Translation (957 aa):
MHVCCPPVTLEQDLHRKMHSWMLQTLAFAVTSLVLSCAETIDYYGEICDNACPCEEKDGILTVSCENRGI
ISLSEISPPRFPIYHLLLSGNLLSRLYPNEFVNYTGASILHLGSNVIQDIETGAFHGLRGLRRLHLNNNK
LELLRDDTFLGLENLEYLQVDYNYISVIEPNAFGKLHMLQVLILNDNLLSGLPNNLFRFVPLTHLDLRGN
RLKLLPYVGLLQHMDKVVELQLEENPWNCSCELISLKDWLDSISYSALVGDVVCETPFRLHGRDLDEVSK
QELCPRKLISDYEMRPQTPLSTTGYLHTTPASVNSVATSSSAVYKPPLKPPKGTRQPNKPRVRPTSRQPS
KDLGYSNYGPSIAYQTKSPVPLECPTACTCNLQISDLGLNVNCQERKIESIAELQPKPYNPKKMYLTENY
ITVVRRTDFLEATGLDLLHLGNNRISMIQDRAFGDLGNLRRLYLNGNRIERLSPELFYGLQSLQYLFLQY
NLIREIQAGTFDPVPNLQLLFLNNNQLQAMPSGVFSGLTLLRLNLRGNSFTSLPVSGVLDQLTSLIQIDL
HDNPWDCTCDVVGMKLWIEQLKVGVLVDEVICKAPKKFAETYMRSIKSELLCPDYSDVVVSTPTPSSIQV
PSRTNAATPAVRLNSTGTPAGLGAGTGASSVPLSVLILSLLLVFIMSVFVAAGLFVLVMKRRKKNQSDHT
STNNSDVSSFNMQYSVYGGGGGGGGGHPHAHVHHRGPALPKVKTPAGHVYEYIPHPLGHMCKNPIYRSRE
GNSVEDYKDLHELKVTYSSNHHLQQQPPPPPQQPQQQPPPQMQMQPGEEERRESHHLRSPAYSVSTIEPR
EDLLSPVQDADRFYRGILEPDKHCSTTPAGSSLPEYPKFPCSPAAYTFSPNYDLRRPHQYLHPGAGESRL
REPVLYSPPGAVFVEPNRNEYLELKAKLNVEPDYLEVLEKQTTFSQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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