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Report for CCDS75472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75472.1 Public Homo sapiens 6 HMGCLL1 24 110 108 CCDS HistoryNCBI Gene:54511Re-query CCDS DB by CCDS ID:75472.1Re-query CCDS DB by GeneID:54511See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75472.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370850.6 ENSP00000359887.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370850.6Link to Ensembl Protein Viewer:ENSP00000359887.2Re-query CCDS DB by Nucleotide ID:ENST00000370850Re-query CCDS DB by Protein ID:ENSP00000359887
Original member Current member NCBI NM_001287753.2 NP_001274682.1 Accepted alive Link to Nucleotide Sequence:NM_001287753.2Link to Protein Sequence:NP_001274682.1Re-query CCDS DB by Nucleotide ID:NM_001287753Re-query CCDS DB by Protein ID:NP_001274682Link to BLAST:NP_001274682.1

Chromosomal Locations for CCDS 75472.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55435662 55435763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55439434 55439559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55495419 55495607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55541729 55541836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55542060 55542140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55578948 55579055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGGGAATGTGCCATCCGCGGTGAAGCACTGCCTCAGCTACCAGCAGCTTCTCCGGGAGCATCTCTGGA
TCGGGGATTCAGTGGCAGGGGCGCTCGACCCCGCGCAGGAAACATCCCAGTTATCTGGACTCCCTGAGTT
TGTTAAAATAGTAGAAGTTGGGCCTAGGGATGGATTGCAGAATGAAAAGGTTATAGTTCCTACAGATATA
AAAATTGAATTTATCAATCGACTTTCCCAAACTGGCTTGTCTGTAATAGAAGTGACTAGCTTTGTGTCTT
CCAGATGGGTACCACAGGTGTCTAAGAGATTGTACGGCATGGGTTGTTATGAGATCTCTCTAGGAGACAC
AATTGGAGTGGGAACTCCAGGAAGTATGAAAAGAATGTTGGAAAGTGTGATGAAAGAAATCCCACCAGGT
GCTCTTGCTGTTCACTGTCATGACACATACGGACAAGCCTTAGCAAATATCCTTACGGCCCTTCAGATGG
GAATTAATGTGGTGGACTCCGCAGTATCCGGATTAGGTGGCTGCCCTTATGCAAAAGGTGCTTCTGGGAA
TGTAGCCACTGAGGATTTGATATATATGCTTAATGGCCTGGGGCTCAATACAGGTGTGAATCTATACAAA
GTGATGGAAGCTGGTGACTTTATTTGCAAAGCTGTGAATAAAACCACAAACTCTAAAGTAGCACAAGCCT
CCTTCAATGCTTGA

Translation (237 aa):
MGNVPSAVKHCLSYQQLLREHLWIGDSVAGALDPAQETSQLSGLPEFVKIVEVGPRDGLQNEKVIVPTDI
KIEFINRLSQTGLSVIEVTSFVSSRWVPQVSKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPG
ALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYK
VMEAGDFICKAVNKTTNSKVAQASFNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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