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Report for CCDS59581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59581.1 Public Mus musculus 13 Calm5 23 108 98 CCDS HistoryNCBI Gene:494124Re-query CCDS DB by CCDS ID:59581.1Re-query CCDS DB by GeneID:494124See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 13, NCBI annotation release 103, Ensembl annotation release 72

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184271.1 ENSMUSP00000139342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184271.1Link to Ensembl Protein Viewer:ENSMUSP00000139342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184271Re-query CCDS DB by Protein ID:ENSMUSP00000139342
Original member Current member NCBI NM_001008706.2 NP_001008706.1 Accepted alive Link to Nucleotide Sequence:NM_001008706.2Link to Protein Sequence:NP_001008706.1Re-query CCDS DB by Nucleotide ID:NM_001008706Re-query CCDS DB by Protein ID:NP_001008706Link to BLAST:NP_001008706.1

Chromosomal Locations for CCDS 59581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 3854268 3854294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 3854335 3854730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTCTCACGGGTTTACTAAGGAGGAGAATAAGGATGGCCATATCAACGTCCAGGAACTTGGAGATGTAA
TGAAGCAGTTGGGCAAGAACCTCTCACATGAGGAACTGAAGGCTCTCATCTCCAAGTTGGACACAGATGG
TGATGGCAAGATCAGCTTTGAAGAATTCTTTAAGTCCATCAAAAAGTACACTAAAGAGCAGGAGCTGCAG
GCTATGTTCAGTGTCCTTGACCAGAATGGTGATGGGTACATCACTGTGGATGAGCTCAAAGAAGGCTTGT
CCAAGATGGGAGAGCCGCTTTCCCAGGAGGAGCTGGAGGGCATGATCCATGTGTTTGGTGCAGACCAAGA
TGGGAAGGTGAACTATGAGCAGTTTTTGAGTCACTACATTGAGACTGTATACAAGGTCCACATATCTGAC
TGA

Translation (140 aa):
MSHGFTKEENKDGHINVQELGDVMKQLGKNLSHEELKALISKLDTDGDGKISFEEFFKSIKKYTKEQELQ
AMFSVLDQNGDGYITVDELKEGLSKMGEPLSQEELEGMIHVFGADQDGKVNYEQFLSHYIETVYKVHISD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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