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Report for CCDS40121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40121.1 Public Mus musculus 7 Il4ra 23 108 98 CCDS HistoryNCBI Gene:16190Re-query CCDS DB by CCDS ID:40121.1Re-query CCDS DB by GeneID:16190See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033004.7 ENSMUSP00000033004.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033004.7Link to Ensembl Protein Viewer:ENSMUSP00000033004.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033004Re-query CCDS DB by Protein ID:ENSMUSP00000033004
Original member Current member NCBI NM_001008700.4 NP_001008700.1 Accepted alive Link to Nucleotide Sequence:NM_001008700.4Link to Protein Sequence:NP_001008700.1Re-query CCDS DB by Nucleotide ID:NM_001008700Re-query CCDS DB by Protein ID:NP_001008700Link to BLAST:NP_001008700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008700.1 810 P16382-1 810 100% 0 0

Chromosomal Locations for CCDS 40121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 125565655 125565724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125567156 125567297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125569023 125569174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125569942 125570093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125571434 125571590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125572851 125572950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125574638 125574716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125575140 125575189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 125575524 125577054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGGGGCGGCTTTGCACCAAGTTCCTGACCTCTGTGGGCTGTCTGATTTTGCTGTTGGTGACTGGATCTG
GGAGCATCAAGGTCCTGGGTGAGCCCACCTGCTTCTCTGACTACATCCGCACTTCCACGTGTGAGTGGTT
CCTGGATAGCGCTGTGGACTGCAGTTCTCAGCTCTGCCTACACTACAGGCTGATGTTCTTCGAGTTCTCT
GAAAACCTCACATGCATCCCGAGGAACAGTGCCAGCACTGTGTGTGTGTGCCACATGGAAATGAATAGGC
CGGTCCAATCAGACAGATACCAGATGGAACTGTGGGCTGAGCACAGACAGCTGTGGCAGGGCTCCTTCAG
CCCCAGTGGTAATGTGAAGCCCCTAGCTCCAGACAACCTCACACTCCACACCAATGTGTCCGACGAATGG
CTGCTGACCTGGAATAACCTGTACCCATCGAACAACTTACTGTACAAAGACCTCATCTCCATGGTCAACA
TCTCCAGAGAGGACAACCCTGCAGAATTCATAGTCTATAATGTGACCTACAAGGAACCCAGGCTGAGCTT
CCCGATCAACATCCTGATGTCAGGGGTCTACTATACGGCGCGTGTGAGGGTCAGATCCCAGATACTCACT
GGCACCTGGAGTGAGTGGAGTCCTAGCATCACGTGGTACAACCACTTCCAGCTGCCCCTGATACAGCGCC
TTCCACTGGGGGTCACCATCTCCTGCCTCTGCATCCCGTTGTTTTGCCTGTTCTGTTACTTCAGCATTAC
CAAGATTAAGAAGATATGGTGGGACCAGATTCCCACCCCAGCACGCAGTCCCTTGGTGGCCATCATCATT
CAGGATGCACAGGTGCCCCTCTGGGATAAGCAGACCCGAAGCCAGGAGTCAACCAAGTACCCGCACTGGA
AAACTTGTCTAGACAAGCTGCTGCCTTGCTTGCTGAAGCACAGAGTAAAGAAGAAGACAGACTTCCCGAA
GGCTGCCCCAACCAAGTCTCTCCAGAGTCCTGGAAAGGCAGGCTGGTGTCCCATGGAGGTCAGCAGGACC
GTCCTCTGGCCAGAGAATGTTAGTGTCAGTGTGGTGCGCTGTATGGAGCTGTTTGAGGCCCCAGTACAGA
ATGTGGAGGAGGAAGAAGATGAGATAGTCAAAGAGGACCTGAGCATGTCACCTGAGAACAGCGGAGGCTG
CGGCTTCCAGGAGAGCCAGGCAGACATCATGGCTCGGCTCACTGAGAACCTGTTTTCCGACTTGTTGGAG
GCTGAGAATGGGGGCCTTGGCCAGTCAGCCTTGGCAGAGTCATGCTCCCCTCTGCCTTCAGGAAGTGGGC
AGGCTTCTGTATCCTGGGCCTGCCTCCCCATGGGGCCCAGTGAGGAGGCCACATGCCAGGTCACAGAGCA
GCCTTCACACCCAGGCCCTCTTTCAGGCAGCCCAGCCCAGAGTGCACCTACTCTGGCTTGCACGCAGGTC
CCACTTGTCCTTGCAGACAATCCTGCCTACCGGAGTTTTAGTGACTGCTGTAGCCCGGCCCCAAATCCTG
GAGAGCTGGCTCCAGAGCAGCAGCAGGCTGATCATCTGGAAGAAGAGGAGCCTCCAAGCCCGGCTGACCC
CCATTCTTCAGGGCCACCAATGCAGCCAGTGGAGAGCTGGGAGCAGATCCTTCACATGAGTGTCCTGCAG
CATGGGGCAGCTGCTGGCTCCACCCCAGCCCCTGCCGGTGGCTACCAGGAGTTTGTGCAGGCAGTGAAGC
AGGGTGCCGCCCAGGATCCTGGGGTGCCTGGTGTCAGGCCTTCTGGAGACCCCGGTTACAAGGCCTTCTC
GAGCCTGCTCAGCAGCAATGGCATCCGCGGGGACACAGCAGCAGCGGGGACTGACGATGGGCATGGAGGC
TACAAGCCCTTCCAGAATCCTGTTCCTAACCAGTCCCCTAGCTCCGTGCCCTTATTTACTTTCGGACTAG
ACACGGAGCTGTCACCCAGTCCTCTGAACTCAGACCCACCCAAAAGCCCCCCAGAATGCCTTGGTCTGGA
GCTGGGGCTCAAAGGAGGTGACTGGGTGAAGGCCCCTCCTCCTGCAGATCAGGTGCCCAAGCCCTTTGGG
GATGACCTGGGCTTTGGTATTGTGTACTCGTCCCTCACTTGCCACTTGTGTGGCCACCTGAAGCAACACC
ACAGCCAGGAGGAAGGTGGCCAGAGCCCCATCGTTGCTAGCCCTGGCTGTGGCTGCTGCTACGATGACAG
ATCACCATCCCTGGGGAGCCTCTCGGGGGCCTTGGAAAGCTGTCCTGAGGGAATACCACCAGAAGCCAAC
CTCATGTCAGCACCCAAGACACCCTCAAACTTGTCAGGGGAGGGCAAGGGCCCTGGTCACTCTCCTGTTC
CCAGCCAGACGACCGAGGTGCCTGTGGGCGCCCTGGGCATTGCTGTTTCTTAG

Translation (810 aa):
MGRLCTKFLTSVGCLILLLVTGSGSIKVLGEPTCFSDYIRTSTCEWFLDSAVDCSSQLCLHYRLMFFEFS
ENLTCIPRNSASTVCVCHMEMNRPVQSDRYQMELWAEHRQLWQGSFSPSGNVKPLAPDNLTLHTNVSDEW
LLTWNNLYPSNNLLYKDLISMVNISREDNPAEFIVYNVTYKEPRLSFPINILMSGVYYTARVRVRSQILT
GTWSEWSPSITWYNHFQLPLIQRLPLGVTISCLCIPLFCLFCYFSITKIKKIWWDQIPTPARSPLVAIII
QDAQVPLWDKQTRSQESTKYPHWKTCLDKLLPCLLKHRVKKKTDFPKAAPTKSLQSPGKAGWCPMEVSRT
VLWPENVSVSVVRCMELFEAPVQNVEEEEDEIVKEDLSMSPENSGGCGFQESQADIMARLTENLFSDLLE
AENGGLGQSALAESCSPLPSGSGQASVSWACLPMGPSEEATCQVTEQPSHPGPLSGSPAQSAPTLACTQV
PLVLADNPAYRSFSDCCSPAPNPGELAPEQQQADHLEEEEPPSPADPHSSGPPMQPVESWEQILHMSVLQ
HGAAAGSTPAPAGGYQEFVQAVKQGAAQDPGVPGVRPSGDPGYKAFSSLLSSNGIRGDTAAAGTDDGHGG
YKPFQNPVPNQSPSSVPLFTFGLDTELSPSPLNSDPPKSPPECLGLELGLKGGDWVKAPPPADQVPKPFG
DDLGFGIVYSSLTCHLCGHLKQHHSQEEGGQSPIVASPGCGCCYDDRSPSLGSLSGALESCPEGIPPEAN
LMSAPKTPSNLSGEGKGPGHSPVPSQTTEVPVGALGIAVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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